Evidence map›Paper›PMID 15958487›Full record

ArticleMolecular biology of the cell2005

Targeting of Tsc13p to nucleus-vacuole junctions: a role for very-long-chain fatty acids in the biogenesis of microautophagic vesicles.

Erik Kvam, Kenneth Gable, Teresa M Dunn, David S Goldfarb

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. A Yeast Mitotic Tale for the Nucleus and the Vacuoles to Embrace.International journal of molecular sciences · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Nucleophagy-Implications for Microautophagy and Health.International journal of molecular sciences · 2020
    Review
  11. Review
  12. Genomic Instability and Cellular Senescence: Lessons From the Budding Yeast.Frontiers in cell and developmental biology · 2020
    Review
  13. Mechanistic insight into the nucleus-vacuole junction based on the Vac8p-Nvj1p crystal structure.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Discovery and Roles of ER-Endolysosomal Contact Sites in Disease.Advances in experimental medicine and biology · 2017
    Review
  15. Review
  16. Review
  17. Organelle remodeling at membrane contact sites.Journal of structural biology · 2016
    Review
  18. Article
  19. Article
  20. The yeast sphingolipid signaling landscape.Chemistry and physics of lipids · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Erik KvamDepartment of Biology, University of Rochester, Rochester, NY 14627, USA.
Kenneth Gable
Teresa M Dunn
David S Goldfarb
Uniformed Services University of the Health Sciences · USUniversity of Rochester · US

Funding

Gating the nuclear pore complex transloconR01GM067838 · NIGMS · UNIVERSITY OF ROCHESTER · PI GOLDFARB, DAVID S · 2003 to 2006
$1.1M
NIGMS NIH HHS R01 GM067838NIGMS NIH HHS R01 GM-67838
6 · The paper itself

Abstract

TSC13 is required for the biosynthesis of very-long-chain fatty acids (VLCFAs) in yeast. Tsc13p is a polytopic endoplasmic reticulum (ER) membrane protein that accumulates at nucleus-vacuole (NV) junctions, which are formed through Velcro-like interactions between Nvj1p in the perinuclear ER and Vac8p on the vacuole membrane. NV junctions mediate piecemeal microautophagy of the nucleus (PMN), during which bleb-like portions of the nucleus are extruded into invaginations of the vacuole membrane and degraded in the vacuole lumen. We report that Tsc13p is sequestered into NV junctions from the peripheral ER through Vac8p-independent interactions with Nvj1p. During nutrient limitation, Tsc13p is incorporated into PMN vesicles in an Nvj1p-dependent manner. The lumenal diameters of PMN blebs and vesicles are significantly reduced in tsc13-1 and tsc13-1 elo3-Delta mutant cells. PMN structures are also smaller in cells treated with cerulenin, an inhibitor of de novo fatty acid synthesis and elongation. The targeting of Tsc13p-GFP into NV junctions is perturbed by cerulenin, suggesting that its binding to Nvj1p depends on the availability of fatty acid substrates. These results indicate that Nvj1p retains and compartmentalizes Tsc13p at NV junctions and that VLCFAs contribute to the normal biogenesis of trilaminar PMN structures in yeast.

Indexed as

AcylationAntifungal AgentsAutophagyCell MembraneCell NucleusCeruleninCytoplasmic VesiclesEndoplasmic ReticulumFatty AcidsLipoproteinsMembrane ProteinsOxidoreductasesOxidoreductases Acting on CH-CH Group DonorsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAntifungal AgentsCeruleninFatty AcidsLipoproteinsMembrane ProteinsNvj1 protein, S cerevisiaeOxidoreductasesOxidoreductases Acting on CH-CH Group DonorsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsTSC13 protein, S cerevisiaeVAC8 protein, S cerevisiaeVesicular Transport Proteins

Identifiers

PMID15958487
PMCPMC1196313
OpenAlexW1997708732

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.