Evidence map›Paper›PMID 15956598›Full record

ArticleJournal of virology2005

pH-induced conformational change of the rotavirus VP4 spike: implications for cell entry and antibody neutralization.

Joseph B Pesavento, Sue E Crawford, Ed Roberts, Mary K Estes, B V Venkataram Prasad

Abstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Penetration of non-enveloped viruses.Nature microbiology · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Both Lewis and secretor status mediate susceptibility to rotavirus infections in a rotavirus genotype-dependent manner.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2014
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Joseph B PesaventoVerna and McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.
Sue E Crawford
Ed Roberts
Mary K Estes
B V Venkataram Prasad
Baylor College of Medicine · USW. M. Keck Foundation · US

Funding

X-ray Crystallographic Studies on CalicivirusesP01AI057788 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PRASAD, BIDADI VENKATARAM · 2004 to 2024
$34.4M
ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI JOACHIMIAK, ANDRZEJ · 1985 to 2011
$22.1M
X-RAY STUDY OF HORMONE-RECEPTOR AND PROTEIN-ANTIBODY COMPLEXESP41RR007707 · NCRR · UNIVERSITY OF CHICAGO · PI STUBBS, GERALD J · 2002 to 2011
$17.3M
Structural Studies on RotavirusesR37AI036040 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PRASAD, BIDADI VENKATARAM · 2003 to 2022
$10.9M
STRUCTURAL STUDIES ON ROTAVIRUSESR01AI036040 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI Bidadi Venkataram Prasad · 1994 to 2026
$4.3M
MOLECULAR BIOLOGY OF THE ROTAVIRUSESR01DK030144 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI ESTES, MARY KOLB · 1986 to 2005
$2.2M
Molecular Biology of the RotavirusesR56DK030144 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI ESTES, MARY KOLB · 2006 to 2007
$443k
NCRR NIH HHS P41 RR002250NCRR NIH HHS P41 RR007707NIAID NIH HHS AI-36040NIAID NIH HHS P01 AI057788NIAID NIH HHS R01 AI036040NIAID NIH HHS R37 AI036040NIDDK NIH HHS DK-30144NIDDK NIH HHS R01 DK030144NIDDK NIH HHS R56 DK030144
6 · The paper itself

Abstract

The rotavirus spike protein, VP4, is a major determinant of infectivity and neutralization. Previously, we have shown that trypsin-enhanced infectivity of rotavirus involves a transformation of the VP4 spike from a flexible to a rigid bilobed structure. Here we show that at elevated pH the spike undergoes a drastic, irreversible conformational change and becomes stunted, with a pronounced trilobed appearance. These particles with altered spikes, at a normal pH of 7.5, despite the loss of infectivity and the ability to hemagglutinate, surprisingly exhibit sialic acid (SA)-independent cell binding in contrast to the SA-dependent cell binding exhibited by native virions. Remarkably, a neutralizing monoclonal antibody that remains bound to spikes throughout the pH changes (pH 7 to 11 and back to pH 7) completely prevents this conformational change, preserving the SA-dependent cell binding and hemagglutinating functions of the virion. A hypothesis that emerges from the present study is that high-pH treatment triggers a conformational change that mimics a post-SA-attachment step to expose an epitope recognized by a downstream receptor in the rotavirus cell entry process. This process involves sequential interactions with multiple receptors, and the mechanism by which the antibody neutralizes is by preventing this conformational change.

Indexed as

Capsid ProteinsHemagglutination Inhibition TestsHemagglutination TestsHydrogen-Ion ConcentrationImage Processing, Computer-AssistedModels, MolecularNeutralization TestsProtein ConformationRotavirusCapsid ProteinsVP4 protein, Rotavirus

Identifiers

PMID15956598
PMCPMC1143764
OpenAlexW2151425261

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.