Evidence map›Paper›PMID 15956383›Full record

ArticleJournal of clinical microbiology2005

Multilocus sequence typing for studying genetic relationships among Yersinia species.

Mamuka Kotetishvili, Arnold Kreger, Georges Wauters, J Glenn Morris, Alexander Sulakvelidze, O Colin Stine

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Changing Face of the FamilyClinical microbiology reviews · 2021
    Review
  6. Article
  7. Genus-wideMicrobial genomics · 2019
    Article
  8. First isolation ofNew microbes and new infections · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Parallel independent evolution of pathogenicity within the genus Yersinia.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  17. Article
  18. Article
  19. Current evidence for human yersiniosis in Ireland.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mamuka KotetishviliDepartment of Epidemiology and Preventive Medicine, University of Maryland School of Medicine, MSTF Bldg., 10 South Pine Street, Baltimore, MD 21201. asulakve@epi.umaryland.edu.
Arnold Kreger
Georges Wauters
J Glenn Morris
Alexander Sulakvelidze
O Colin Stine

Funding

Genetic clustering and virulence of Y. pestis strainsR21AI055660 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SULAKVELIDZE, ALEXANDER · 2004 to 2005
$570k
NIAID NIH HHS 1R21 AI055660-01A1NIAID NIH HHS R21 AI055660
6 · The paper itself

Abstract

The intra- and interspecies genetic relationships of 58 strains representing all currently known species of the genus Yersinia were examined by multilocus sequence typing (MLST), using sequence data from 16S RNA, glnA, gyrB, recA, and Y-HSP60 loci. Yersinia aldovae, Y. bercovieri, Y. intermedia, Y. pestis, Y. pseudotuberculosis, Y. rohdei, and Y. ruckeri were genetically more homogeneous than were Y. enterocolitica, Y. frederiksenii, Y. kristensenii, and Y. mollaretii. The MLST data concerning the genetic relatedness within and among various species of Yersinia support the idea that Y. pestis and Y. pseudotuberculosis are two lineages within the same species rather than two distinct species. Y. ruckeri is the genetically most distant species within the genus. There was evidence of O-antigen switching and genetic recombination within and among various species of Yersinia. The genetic relatedness data obtained by MLST of the four housekeeping genes and 16S RNA agreed in most, but not all, instances. MLST was better suited for determining genetic relatedness among yersiniae than was 16S RNA analysis. Some strains of Y. frederiksenii and Y. kristensenii are genetically less related to other strains within those species, compared to strains of all other species within the genus. The taxonomic standing of these strains should be further examined because they may represent currently unrecognized Yersinia species.

Indexed as

Sequence Analysis, DNAAnimalsBacterial ProteinsBacterial Typing TechniquesDNA, BacterialDNA, RibosomalDogsGenetic VariationHumansMolecular Sequence DataRNA, Ribosomal, 16SYersiniaBacterial ProteinsDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID15956383
PMCPMC1151872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.