Evidence map›Paper›PMID 15954864›Full record

ArticleThe Biochemical journal2005

A novel alpha-glucosidase from the acidophilic archaeon Ferroplasma acidiphilum strain Y with high transglycosylation activity and an unusual catalytic nucleophile.

Manuel Ferrer, Olga V Golyshina, Francisco J Plou, Kenneth N Timmis, Peter N Golyshin

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Article in The Biochemical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Manuel FerrerDepartment of Microbiology, German Research Centre for Biotechnology (GFB), Mascheroder Weg 1, 38124 Braunschweig, Germany. mferrer@icp.csic.es
Olga V Golyshina
Francisco J Plou
Kenneth N Timmis
Peter N Golyshin
Helmholtz Centre for Infection Research · DETechnische Universität Braunschweig · DEInstituto de Catálisis y Petroleoquímica · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ferroplasma acidiphilum strain Y (DSM 12658), a ferrous iron-oxidizing, acidophilic and mesophilic archaeon, was found to produce a membrane-bound alpha-glucosidase (alphaGluFa) showing no significant similarity to any of the known glycoside hydrolases classified in different families and having an unusual catalytic site consisting of a threonine and a histidine residue. The highest alpha-glucosidase activity was found at low pH, 2.4-3.5, and the substrate preference order was: sucrose>maltose>maltotriose >>maltotetraose>>malto-oligosaccharides from maltopentaose to maltoheptaose>>>soluble starch (kcat/K(m) was 293.0, 197.0, 18.8, 0.3 and 0.02 s(-1) x mM(-1) respectively). The enzyme was able to transfer glucosyl groups from maltose as donor, to produce exclusively maltotriose (up to 300 g/l). Chemical modification and electrospray ionization MS analysis of 5-fluoro-alpha-D-glucopyranosyl-enzyme derivatives, coupled with site-directed mutagenesis, strongly suggested that the putative catalytic nucleophile in this enzyme is Thr212. Iron was found to be essential for enzyme activity and integrity, and His390 was shown to be essential for iron binding. These results suggest that the metalloenzyme alphaGluFa is a new member of the glycosyl hydrolase family that uses a novel mechanism for sugar glycosylation and/or transglycosylation.

Indexed as

alpha-GlucosidasesArchaeaBinding SitesCatalysisCloning, MolecularEnzyme StabilityGlucosidesGlycoside Hydrolase InhibitorsGlycosylationHydrogen-Ion ConcentrationIronKineticsMaltoseProtein BindingSubstrate SpecificitySucrose4-nitrophenyl alpha-glucosidealpha-GlucosidasesGlucosidesGlycoside Hydrolase InhibitorsIronMaltosemaltotrioseSucroseTrisaccharides

Identifiers

PMID15954864
PMCPMC1276924
OpenAlexW2061534050

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.