Evidence map›Paper›PMID 15951846›Full record

ArticleInternational journal of biological sciences2005

No more than 14: the end of the amphioxus Hox cluster.

Carolina Minguillón, Josep Gardenyes, Elisa Serra, L Filipe C Castro, Alicia Hill-Force, Peter W H Holland, Chris T Amemiya, Jordi Garcia-Fernàndez

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Physical Laws Shape Up HOX Gene Collinearity.Journal of developmental biology · 2021
    Review
  3. A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That ExpressFrontiers in cell and developmental biology · 2021
    Article
  4. Article
  5. The role of self-organization in developmental evolution.Theory in biosciences = Theorie in den Biowissenschaften · 2014
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Deciphering deuterostome phylogeny: molecular, morphological and palaeontological perspectives.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2008
    Review
  14. Article
  15. Article
  16. Article
  17. A SINE in the genome of the cephalochordate amphioxus is an Alu element.International journal of biological sciences · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 5 countries.

Carolina MinguillónDepartament de Genètica, Facultat de Biologia, Universitat de Barcelona. Av. Diagonal, 645. E-08028, Barcelona, Spain.
Josep Gardenyes
Elisa Serra
L Filipe C Castro
Alicia Hill-Force
Peter W H Holland
Chris T Amemiya
Jordi Garcia-Fernàndez
Tampa Bay Research Institute · USLawrence Livermore National Laboratory · USBoston University · USUniversitat de Barcelona · ESVirginia Mason Medical Center · US

Funding

COOPERATIVE AGREEMENT: VIRGINIA MASON BAC LIBRARY RESO*U01HG002526 · NHGRI · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI AMEMIYA, CHRIS T. · 2002 to 2006
$3.3M
NHGRI NIH HHS U01 HG002526
6 · The paper itself

Abstract

The Hox gene cluster has been a key paradigm for a generation of developmental and evolutionary biologists. Since its discovery in the mid-1980's, the identification, genomic organization, expression, colinearity, and regulation of Hox genes have been immediate targets for study in any new model organism, and metazoan genome projects always refer to the structure of the particular Hox cluster(s). Since the early 1990's, it has been dogma that vertebrate Hox clusters are composed of thirteen paralogous groups. Nonetheless, we showed that in the otherwise prototypical cephalochordate amphioxus (Branchiostoma floridae), the Hox cluster contains a fourteenth Hox gene, and very recently, a 14(th) Hox paralogous group has been found in the coelacanth and the horn shark, suggesting that the amphioxus cluster was anticipating the finding of Hox 14 in some vertebrate lineages. In view of the pivotal place that amphioxus occupies in vertebrate evolution, we thought it of considerable interest to establish the limits of its Hox gene cluster, namely resolution of whether more Hox genes are present in the amphioxus cluster (e.g., Hox 15). Using two strategies, here we report the completion and characterization of the Hox gene content of the single amphioxus Hox cluster, which encompasses 650 kb from Hox1 to Evx. Our data have important implications for the primordial Hox gene cluster of chordates: the prototypical nature of the single amphioxus Hox cluster makes it unlikely that additional paralogous groups will be found in any chordate lineage. We suggest that 14 is the end.

Indexed as

AnimalsChordata, NonvertebrateChromosome WalkingCosmidsEvolution, MolecularGene DuplicationGene LibraryGenes, HomeoboxIn Situ Hybridization, FluorescenceMultigene Family

Identifiers

PMID15951846
PMCPMC1140354
OpenAlexW2075607596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.