Evidence map›Paper›PMID 15951821›Full record

ArticleNature genetics2005

Use of human tissue to assess the oncogenic activity of melanoma-associated mutations.

Yakov Chudnovsky, Amy E Adams, Paul B Robbins, Qun Lin, Paul A Khavari

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it, 198 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Cross-species models of human melanoma.The Journal of pathology · 2016
    Review
  17. MEK plus PI3K/mTORC1/2 Therapeutic Efficacy Is Impacted by TP53 Mutation in Preclinical Models of Colorectal Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2015
    Article
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yakov ChudnovskyVeterans Affairs Palo Alto Healthcare System, Palo Alto, California 94304, USA.
Amy E Adams
Paul B Robbins
Qun Lin
Paul A Khavari
VA Palo Alto Health Care System · USStanford University · US

Funding

Mechanisms of Epidermal Homeostasis and Early NeoplasiaR01AR043799 · NIAMS · STANFORD UNIVERSITY · PI PAUL KHAVARI · 1998 to 2026
$9.1M
NIAMS NIH HHS R01 AR043799
6 · The paper itself

Abstract

Multiple genetic alterations occur in melanoma, a lethal skin malignancy of increasing incidence. These include mutations that activate Ras and two of its effector cascades, Raf and phosphoinositide 3-kinase (PI3K). Induction of Ras and Raf can be caused by active N-Ras and B-Raf mutants as well as by gene amplification. Activation of PI3K pathway components occurs by PTEN loss and by AKT3 amplification. Melanomas also commonly show impairment of the p16(INK4A)-CDK4-Rb and ARF-HDM2-p53 tumor suppressor pathways. CDKN2A mutations can produce p16(INK4A) and ARF protein loss. Rb bypass can also occur through activating CDK4 mutations as well as by CDK4 amplification. In addition to ARF deletion, p53 pathway disruption can result from dominant negative TP53 mutations. TERT amplification also occurs in melanoma. The extent to which these mutations can induce human melanocytic neoplasia is unknown. Here we characterize pathways sufficient to generate human melanocytic neoplasia and show that genetically altered human tissue facilitates functional analysis of mutations observed in human tumors.

Indexed as

MutationAnimalsCells, CulturedCyclin-Dependent Kinase 4Cyclin-Dependent KinasesDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, NeoplasticGenes, rasHumansMelanocytesMelanomaMiceMice, SCIDNeoplasm InvasivenessPhosphoric Monoester HydrolasesCDK4 protein, humanCdk4 protein, mouseCyclin-Dependent Kinase 4Cyclin-Dependent KinasesDNA-Binding ProteinsPhosphoric Monoester HydrolasesProto-Oncogene ProteinsPTEN PhosphohydrolasePTEN protein, humanTelomeraseTERT protein, humanTert protein, mouseTumor Suppressor Protein p53Tumor Suppressor Proteins

Identifiers

PMID15951821
PMCPMC3063773
OpenAlexW1993336164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.