Evidence map›Paper›PMID 15951513›Full record

ArticleNucleic acids research2005

cAMP-responsive element in TATA-less core promoter is essential for haploid-specific gene expression in mouse testis.

Pranee Somboonthum, Hiroshi Ohta, Shuichi Yamada, Masayoshi Onishi, Akiko Ike, Yoshitake Nishimune, Masami Nozaki

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Pranee SomboonthumDepartment of Science for Laboratory Animal Experimentation, Research Institute for Microbial Diseases, Osaka University Suita, Osaka 565-0871, Japan.
Hiroshi Ohta
Shuichi Yamada
Masayoshi Onishi
Akiko Ike
Yoshitake Nishimune
Masami Nozaki
Microbial Chemistry Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Promoters, including neither TATA box nor initiator, have been frequently found in testicular germ cell-specific genes in mice. These investigations imply that unique forms of the polymerase II transcription initiation machinery play a role in selective activation of germ cell-specific gene expression programs during spermatogenesis. However, there is little information about testis-specific core promoters, because useful germ cell culture system is not available. In this study, we characterize the regulatory region of the haploid-specific Oxct2b gene in detail by using in vivo transient transfection assay in combination with a transgenic approach, with electrophoretic mobility shift and chromatin immunoprecipitation assays. Expression studies using mutant constructs demonstrate that a 34 bp region, which extends from -49 to -16, acts as a core promoter in an orientation-dependent manner. This promoter region includes the cAMP-responsive element (CRE)-like sequence TGACGCAG, but contains no other motifs, such as a TATA box or initiator. The CRE-like element is indispensable for the core promoter activity, but not for activator in testicular germ cells, through the binding of a testis-specific CRE modulator transcription factor. These results indicate the presence of alternative transcriptional initiation machinery for cell-type-specific gene expression in testicular germ cells.

Indexed as

Promoter Regions, GeneticResponse Elements5' Flanking RegionAnimalsBase SequenceBinding SitesCoenzyme A-TransferasesCyclic AMPCyclic AMP Response Element ModulatorDNA-Binding ProteinsElectroporationHaploidyMaleMiceMice, TransgenicMolecular Sequence Data3-ketoacid CoA-transferaseCoenzyme A-TransferasesCyclic AMPCyclic AMP Response Element ModulatorDNA-Binding ProteinsTranscription Factors

Identifiers

PMID15951513
PMCPMC1150221
OpenAlexW2167553025

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.