Evidence map›Paper›PMID 15951490›Full record

ArticleThe Plant cell2005

Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance.

Peter Geigenberger, Babette Regierer, Adriano Nunes-Nesi, Andrea Leisse, Ewa Urbanczyk-Wochniak, Franziska Springer, Joost T van Dongen, Jens Kossmann, Alisdair R Fernie

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
9.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
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  7. CTP Synthase 2 FromFrontiers in plant science · 2021
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  8. SNPeffect: identifying functional roles of SNPs using metabolic networks.The Plant journal : for cell and molecular biology · 2020
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  9. Review
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  11. Endophyte-Promoted Phosphorus Solubilization inFrontiers in plant science · 2020
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  12. Article
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  14. UMP Kinase Regulates Chloroplast Development and Cold Response in Rice.International journal of molecular sciences · 2019
    Article
  15. Review
  16. Starch Trek: The Search for Yield.Frontiers in plant science · 2018
    Review
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Peter GeigenbergerMax Planck Institute of Molecular Plant Physiology, 14476 Golm, Germany.
Babette Regierer
Adriano Nunes-Nesi
Andrea Leisse
Ewa Urbanczyk-Wochniak
Franziska Springer
Joost T van Dongen
Jens Kossmann
Alisdair R Fernie
Max Planck Institute of Molecular Plant Physiology · DEStellenbosch University · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pyrimidine nucleotides are of general importance for many aspects of cell function, but their role in the regulation of biosynthetic processes is still unclear. In this study, we investigate the influence of a decreased expression of UMP synthase (UMPS), a key enzyme in the pathway of de novo pyrimidine synthesis, on biosynthetic processes in growing potato (Solanum tuberosum) tubers. Transgenic plants were generated expressing UMPS in the antisense orientation under the control of the tuber-specific patatin promoter. Lines were selected with markedly decreased expression of UMPS in the tubers. Decreased expression of UMPS restricted the use of externally supplied orotate for de novo pyrimidine synthesis in tuber tissue, whereas the uridine-salvaging pathway was stimulated. This shift in the pathways of UMP synthesis was accompanied by increased levels of tuber uridine nucleotides, increased fluxes of [(14)C]sucrose to starch and cell wall synthesis, and increased amounts of starch and cell wall components in the tubers, whereas there were no changes in uridine nucleotide levels in leaves. Decreased expression of UMPS in tubers led to an increase in transcript levels of carbamoylphosphate synthase, uridine kinase, and uracil phosphoribosyltransferase, the latter two encoding enzymes in the pyrimidine salvage pathways. Thus, the results show that antisense inhibition of the de novo pathway of pyrimidine synthesis leads to a compensatory stimulation of the less energy-consuming salvage pathways, probably via increased expression and activity of uridine kinase and uracil phosphoribosyltransferase. This results in increased uridine nucleotide pool levels in tubers and improved biosynthetic performance.

Indexed as

Down-RegulationEnzyme ActivationGene Expression Regulation, PlantMultienzyme ComplexesOligoribonucleotides, AntisenseOrotate PhosphoribosyltransferaseOrotic AcidOrotidine-5'-Phosphate DecarboxylasePlants, Genetically ModifiedPlant TubersPromoter Regions, GeneticPyrimidinesSignal TransductionSolanum tuberosumUp-RegulationUridineMultienzyme ComplexesOligoribonucleotides, AntisenseOrotate PhosphoribosyltransferaseOrotic AcidOrotidine-5'-Phosphate DecarboxylasePyrimidinesUridineuridine 5'-monophosphate synthase

Identifiers

PMID15951490
PMCPMC1167553
OpenAlexW2139886312

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.