Evidence map›Paper›PMID 15947782›Full record

ArticleEMBO reports2005

Crystal structure of a polyphosphate kinase and its implications for polyphosphate synthesis.

Ye Zhu, Weijun Huang, Sam S K Lee, Wenqing Xu

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 114 citations in OpenAlex.

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  11. The Protein Scaffolding Functions of Polyphosphate.Journal of molecular biology · 2024
    Review
  12. Article
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  20. Did Cyclic Metaphosphates Have a Role in the Origin of Life?Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ye ZhuDepartment of Biological Structure, Box 357420, University of Washington, Seattle, Washington 98195, USA.
Weijun Huang
Sam S K Lee
Wenqing Xu
University of Washington · USEKOS Corporation · US

Funding

Crystallographic Studies of Polyphosphate KinaseR01AI056253 · NIAID · UNIVERSITY OF WASHINGTON · PI XU, WENQING · 2003 to 2007
$1.3M
NIAID NIH HHS AI056253NIAID NIH HHS R01 AI056253
6 · The paper itself

Abstract

Polyphosphate (polyP), a linear polymer of hundreds of orthophosphate residues, exists in all tested cells in nature, from pathogenic bacteria to mammals. In bacteria, polyP has a crucial role in stress responses and stationary-phase survival. Polyphosphate kinase (PPK) is the principal enzyme that catalyses the synthesis of polyP in bacteria. It has been shown that PPK is required for bacterial motility, biofilm formation and the production of virulence factors. PPK inhibitors may thus provide a unique therapeutic opportunity against antibiotic-resistant pathogens. Here, we report crystal structures of full-length Escherichia coli PPK and its complex with AMPPNP (beta-gamma-imidoadenosine 5-phosphate). PPK forms an interlocked dimer, with each 80 kDa monomer containing four structural domains. The PPK active site is located in a tunnel, which contains a unique ATP-binding pocket and may accommodate the translocation of synthesized polyP. The PPK structure has laid the foundation for understanding the initiation of polyP synthesis by PPK.

Indexed as

Adenosine TriphosphateAdenylyl ImidodiphosphateAmino Acid SequenceBinding SitesCrystallographyDimerizationEscherichia coliEscherichia coli ProteinsMolecular Sequence DataPhosphotransferases (Alcohol Group Acceptor)PolyphosphatesProtein ConformationAdenosine TriphosphateAdenylyl ImidodiphosphateEscherichia coli ProteinsPhosphotransferases (Alcohol Group Acceptor)polyphosphate kinase, E coliPolyphosphates

Identifiers

PMID15947782
PMCPMC1369109
OpenAlexW2120230644

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.