Evidence map›Paper›PMID 15947202›Full record

ArticleEukaryotic cell2005

Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae.

Charles Hall, Sophie Brachat, Fred S Dietrich

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 259 citations in OpenAlex.

  1. Review
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  8. Regulatory activity is the default DNA state in eukaryotes.Nature structural & molecular biology · 2024
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  10. Mosaic Genome of a British Cider Yeast.International journal of molecular sciences · 2023
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  18. Truth in wine yeast.Microbial biotechnology · 2022
    Review
  19. Article
  20. Article

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Charles HallDepartment of Molecular Genetics and Microbiology, Duke University Medical Center (DUMC) 289 CARL Building, Box 3568, Durham, NC 27710, USA.
Sophie Brachat
Fred S Dietrich
Duke Medical Center · USUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genomes of the hemiascomycetes Saccharomyces cerevisiae and Ashbya gossypii have been completely sequenced, allowing a comparative analysis of these two genomes, which reveals that a small number of genes appear to have entered these genomes as a result of horizontal gene transfer from bacterial sources. One potential case of horizontal gene transfer in A. gossypii and 10 potential cases in S. cerevisiae were identified, of which two were investigated further. One gene, encoding the enzyme dihydroorotate dehydrogenase (DHOD), is potentially a case of horizontal gene transfer, as shown by sequencing of this gene from additional bacterial and fungal species to generate sufficient data to construct a well-supported phylogeny. The DHOD-encoding gene found in S. cerevisiae, URA1 (YKL216W), appears to have entered the Saccharomycetaceae after the divergence of the S. cerevisiae lineage from the Candida albicans lineage and possibly since the divergence from the A. gossypii lineage. This gene appears to have come from the Lactobacillales, and following its acquisition the endogenous eukaryotic DHOD gene was lost. It was also shown that the bacterially derived horizontally transferred DHOD is required for anaerobic synthesis of uracil in S. cerevisiae. The other gene discussed in detail is BDS1, an aryl- and alkyl-sulfatase gene of bacterial origin that we have shown allows utilization of sulfate from several organic sources. Among the eukaryotes, this gene is found in S. cerevisiae and Saccharomyces bayanus and appears to derive from the alpha-proteobacteria.

Indexed as

Evolution, MolecularGenes, FungalGene Transfer, HorizontalAmino Acid SequenceBayes TheoremCrosses, GeneticDihydroorotate DehydrogenaseFungal ProteinsGenetic Complementation TestGenome, FungalMolecular Sequence DataOxidoreductases Acting on CH-CH Group DonorsPhylogenySaccharomyces cerevisiaeSaccharomycetalesSequence Analysis, DNAalkylsulfataseDihydroorotate DehydrogenaseFungal ProteinsOxidoreductases Acting on CH-CH Group DonorsSulfatases

Identifiers

PMID15947202
PMCPMC1151995
OpenAlexW2126373564

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.