Evidence map›Paper›PMID 15939874›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A.

Alexander C Zambon, Lingzhi Zhang, Simon Minovitsky, Joan R Kanter, Shyam Prabhakar, Nathan Salomonis, Karen Vranizan, Inna Dubchak, Bruce R Conklin, Paul A Insel

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
  2. Article
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  7. Microbiology spectrum · 2022
    Article
  8. Article
  9. Clinical Implication of Phosphodiesterase-4-Inhibition.International journal of molecular sciences · 2022
    Review
  10. The VirB System Plays a Crucial Role inInternational journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. A novel role of ADGRF1 (GPR110) in promoting cellular quiescence and chemoresistance in human epidermal growth factor receptor 2-positive breast cancer.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  14. Complex roles of cAMP-PKA-CREB signaling in cancer.Experimental hematology & oncology · 2020
    Review
  15. Article
  16. Review
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  19. Review
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Alexander C ZambonGladstone Institute of Cardiovascular Disease, University of California, San Francisco, CA 94141, USA.
Lingzhi Zhang
Simon Minovitsky
Joan R Kanter
Shyam Prabhakar
Nathan Salomonis
Karen Vranizan
Inna Dubchak
Bruce R Conklin
Paul A Insel
University of California, Berkeley · USJoint Genome Institute · USLawrence Berkeley National Laboratory · US

Funding

Comparative Genomic Resources for CV ResearchU01HL066681 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI RUBIN, EDWARD M · 2000 to 2007
$14.1M
Beta-Adrenergic Receptors of S49 Lymphoma CellsR01GM061774 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI INSEL, PAUL A · 2002 to 2005
$1.3M
NHLBI NIH HHS U01 HL066681NHLBI NIH HHS U1HL66681BNIGMS NIH HHS GM 61774NIGMS NIH HHS R01 GM061774
6 · The paper itself

Abstract

Although a substantial number of hormones and drugs increase cellular cAMP levels, the global impact of cAMP and its major effector mechanism, protein kinase A (PKA), on gene expression is not known. Here we show that treatment of murine wild-type S49 lymphoma cells for 24 h with 8-(4-chlorophenylthio)-cAMP (8-CPT-cAMP), a PKA-selective cAMP analog, alters the expression of approximately 4,500 of approximately 13,600 unique genes. By contrast, gene expression was unaltered in Kin- S49 cells (that lack PKA) incubated with 8-CPT-cAMP. Changes in mRNA and protein expression of several cell-cycle regulators accompanied cAMP-induced G1-phase cell-cycle arrest of wild-type S49 cells. Within 2 h, 8-CPT-cAMP altered expression of 152 genes that contain evolutionarily conserved cAMP-response elements within 5 kb of transcriptional start sites, including the circadian clock gene Per1. Thus, cAMP through its activation of PKA produces extensive transcriptional regulation in eukaryotic cells. These transcriptional networks include a primary group of cAMP-response element-containing genes and secondary networks that include the circadian clock.

Indexed as

AnimalsCell CycleCell Cycle ProteinsCluster AnalysisCyclic AMPCyclic AMP-Dependent Protein KinasesGene Expression RegulationImmunoblottingMiceMicroarray AnalysisNuclear ProteinsPeriod Circadian ProteinsReverse Transcriptase Polymerase Chain ReactionThionucleotidesTumor Cells, Cultured8-((4-chlorophenyl)thio)cyclic-3',5'-AMPCell Cycle ProteinsCyclic AMPCyclic AMP-Dependent Protein KinasesNuclear ProteinsPer1 protein, mousePeriod Circadian ProteinsThionucleotides

Identifiers

PMID15939874
PMCPMC1150853
OpenAlexW2079670268

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.