ArticleMolecular genetics and genomics : MGG2005
Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana.
Article in Molecular genetics and genomics : MGG, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Consensus genetic map and QTLs for morphological and agronomical traits in mungbean using DArT markers.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Associative and Physical Mapping of Markers Related toInternational journal of molecular sciences · 2022Article
- Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints.Nature communications · 2020Article
- B chromosomes are associated with redistribution of genetic recombination towards lower recombination chromosomal regions in perennial ryegrass.Journal of experimental botany · 2018Article
- DArT whole genome profiling provides insights on the evolution and taxonomy of edible Banana (Musa spp.).Annals of botany · 2016Article
- Genetic composition of interspecific potato somatic hybrids and autofused 4x plants evaluated by DArT and cytoplasmic DNA markers.Plant cell reports · 2016Article
- The genetic diversity of triticale genotypes involved in Polish breeding programs.SpringerPlus · 2016Article
- Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives.Genetics research international · 2015Review
- Construction of Commercial Sweet Cherry Linkage Maps and QTL Analysis for Trunk Diameter.PloS one · 2015Article
- Article
- Rapid genotyping with DNA micro-arrays for high-density linkage mapping and QTL mapping in common buckwheat (Fagopyrum esculentum Moench).Breeding science · 2014Article
- A DArT marker-based linkage map for wild potato Solanum bulbocastanum facilitates structural comparisons between Solanum A and B genomes.BMC genetics · 2014Article
- Genome-wide association studies of agronomic and quality traits in a set of German winter barley (Hordeum vulgare L.) cultivars using Diversity Arrays Technology (DArT).Journal of applied genetics · 2014Article
- Description of durum wheat linkage map and comparative sequence analysis of wheat mapped DArT markers with rice and Brachypodium genomes.BMC genetics · 2013Article
- Construction of integrated linkage map of a recombinant inbred line population of white lupin (Lupinus albus L.).Breeding science · 2013Article
- A gDNA microarray for genotyping salvia species.Molecular biotechnology · 2013Article
- Rapid development of molecular markers by next-generation sequencing linked to a gene conferring phomopsis stem blight disease resistance for marker-assisted selection in lupin (Lupinus angustifolius L.) breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Article
- Characterization of wheat DArT markers: genetic and functional features.Molecular genetics and genomics : MGG · 2012Article
- Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Diversity Arrays Technology (DArT) is a microarray-based DNA marker technique for genome-wide discovery and genotyping of genetic variation. DArT allows simultaneous scoring of hundreds of restriction site based polymorphisms between genotypes and does not require DNA sequence information or site-specific oligonucleotides. This paper demonstrates the potential of DArT for genetic mapping by validating the quality and molecular basis of the markers, using the model plant Arabidopsis thaliana. Restriction fragments from a genomic representation of the ecotype Landsberg erecta (Ler) were amplified by PCR, individualized by cloning and spotted onto glass slides. The arrays were then hybridized with labeled genomic representations of the ecotypes Columbia (Col) and Ler and of individuals from an F(2) population obtained from a Col x Ler cross. The scoring of markers with specialized software was highly reproducible and 107 markers could unambiguously be ordered on a genetic linkage map. The marker order on the genetic linkage map coincided with the order on the DNA sequence map. Sequencing of the Ler markers and alignment with the available Col genome sequence confirmed that the polymorphism in DArT markers is largely a result of restriction site polymorphisms.
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