Evidence map›Paper›PMID 15937282›Full record

ArticleProtein science : a publication of the Protein Society2005

Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa.

Jared M Trefethen, C Nick Pace, J Martin Scholtz, David N Brems

Abstract readComparative Study
In one paragraph

Article in Protein science : a publication of the Protein Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Microbial ribonucleases (RNases): production and application potential.World journal of microbiology & biotechnology · 2015
    Review
  4. Energetically significant networks of coupled interactions within an unfolded protein.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  5. Article
  6. Rational modification of protein stability by targeting surface sites leads to complicated results.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Thermally denatured state determines refolding in lipase: mutational analysis.Protein science : a publication of the Protein Society · 2009
    Article
  12. Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. pK values of the ionizable groups of proteins.Protein science : a publication of the Protein Society · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jared M TrefethenDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843-1114, USA.
C Nick Pace
J Martin Scholtz
David N Brems

Funding

ENERGETICS AND MECHANISM OF FOLDING OF RIBONUCLEASE T1R01GM037039 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI PACE, CARLOS N · 1986 to 2006
$1.6M
LOCAL AND LONG RANGE INTERACTIONS IN PROTEIN FOLDINGR01GM052483 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI SCHOLTZ, J. MARTIN · 2001 to 2004
$806k
HIERARCHY OF PROTEIN FOLDING AND STABILITYR29GM052483 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI SCHOLTZ, J. MARTIN · 1995 to 1999
–
NIGMS NIH HHS GM-37039NIGMS NIH HHS GM-52483NIGMS NIH HHS R01 GM037039NIGMS NIH HHS R01 GM052483NIGMS NIH HHS R29 GM052483
6 · The paper itself

Abstract

Gaining a better understanding of the denatured state ensemble of proteins is important for understanding protein stability and the mechanism of protein folding. We studied the folding kinetics of ribonuclease Sa (RNase Sa) and a charge-reversal variant (D17R). The refolding kinetics are similar, but the unfolding rate constant is 10-fold greater for the variant. This suggests that charge-charge interactions in the denatured state and the transition state ensembles are more favorable in the variant than in RNase Sa, and shows that charge-charge interactions can influence the kinetics and mechanism of protein folding.

Indexed as

Protein DenaturationProtein FoldingEnzyme StabilityIsoenzymesKineticsMutationProtein ConformationRibonucleasesIsoenzymesRibonucleasesribonuclease Sa3

Identifiers

PMID15937282
PMCPMC2253365

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.