Evidence map›Paper›PMID 15928998›Full record

ArticleJournal of biomolecular NMR2005

A set of HA-detected experiments for measuring scalar and residual dipolar couplings.

Peter Würtz, Kai Fredriksson, Perttu Permi

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Article in Journal of biomolecular NMR, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Peter WürtzNMR Laboratory, Program in Structural Biology and Biophysics, Institute of Biotechnology, University of Helsinki, Finland.
Kai Fredriksson
Perttu Permi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A new set of HCACO based three-dimensional NMR experiments for measuring residual dipolar couplings in proteins is presented. Using spin-state selection and editing in three dimensions, the experiments allow accurate measurement of intraresidual (1)D(C'H(alpha)), (1)D(C'C(alpha)) and (2)D(C'H(alpha)) scalar and residual dipolar couplings of (15) N/(13)C labeled proteins in D(2)O and dilute liquid crystals with minimal spectral crowding. The presented experiments are especially suitable for small or medium sized proline-rich proteins, or proteins that require high pH solvent conditions, making (1)H(N) detected experiments unattractive. In addition, the tetrahedral coordination of C(alpha) is superior to the planar peptide bond for determination of local alignments in partially structured polypeptides. For the efficient use of spectrometer time and to avoid complications arising from the varying magnitude of the alignment tensor during relatively long experiments, the (1)D(C'H(alpha)) and (2)D(C'H(alpha)) couplings can also be measured simultaneously in an E.COSY like manner with high accuracy. The pulse sequences are balanced for cross-correlation effects and minimized for relaxation losses. The pulse sequences are tested with a sample of (15)N/(13)C human ubiquitin. We find internuclear vector directions determined from the dipolar couplings to have an excellent correlation with those of ubiquitin's refined solution structure.

Indexed as

CarbonCarbon IsotopesDeuterium OxideHumansHydrogen-Ion ConcentrationMagnetic Resonance SpectroscopyModels, ChemicalNitrogenNitrogen IsotopesPeptidesProlineUbiquitinCarbonCarbon IsotopesDeuterium OxideNitrogenNitrogen IsotopesPeptidesProlineUbiquitin

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.