Evidence map›Paper›PMID 15924217›Full record

ArticleJournal of human genetics2005

A novel (TG)n(GA)m repeat polymorphism 254 bp downstream of the mast cell chymase (CMA1) gene is associated with atopic asthma and total serum IgE levels.

Shilpy Sharma, U Mabali Rajan, Amrendra Kumar, Abha Soni, Balaram Ghosh

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. An understanding of the genetic basis of asthma.The Indian journal of medical research · 2011
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shilpy SharmaMolecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.
U Mabali RajanMolecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.
Amrendra KumarMolecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.
Abha SoniMolecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.
Balaram GhoshMolecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India. bghosh@igib.res.in.
Institute of Genomics and Integrative Biology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gene for mast cell chymase (CMA1) is an ideal candidate for investigating genetic predisposition to atopic asthma, as it is an important mediator of inflammation and remodeling in the asthmatic lung. Various studies have examined the association between -1903 G/A polymorphism and allergic phenotypes, but inconsistent results have been obtained. We investigated the association of this SNP and a novel (TG)(n)(GA)(m) repeat polymorphism (accession no. BV210164) 254 bp downstream of the gene with asthma and its associated traits in a case-control study in two independent cohorts recruited from the Indian population. A significant association was observed for the (TG)(n)(GA)(m) repeat with asthma (p<0.05) in both the cohorts. Although no association was observed for the -1903 G/A SNP with asthma, a significant association was observed between the genotypes and serum IgE levels (p=0.003 and 0.0004 for cohort A and B). When haplotypes were compared between patients and controls, the haplotype G_43 was found at higher frequency in controls (p=0.05). Also, on comparing major haplotypes (>5%) with respect to log total serum IgE levels, a significant difference was obtained (p=0.018 and p=0.046 for cohorts A and B). These results suggest that the CMA1 gene contributes to asthma susceptibility and may be involved in regulating IgE levels in atopic asthma.

Indexed as

Polymorphism, GeneticAdultAnalysis of VarianceAsthmaBase SequenceChymasesDNA PrimersFemaleGenetic Predisposition to DiseaseGenotypeHaplotypesHumansImmunoglobulin EIndiaMaleMolecular Sequence DataChymasesCMA1 protein, humanDNA PrimersImmunoglobulin ESerine Endopeptidases

Identifiers

PMID15924217
OpenAlexW2059632208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.