Evidence map›Paper›PMID 15923223›Full record

ArticleBiophysical journal2005

Accuracy and dynamic range of spatial image correlation and cross-correlation spectroscopy.

Santiago Costantino, Jonathan W D Comeau, David L Kolin, Paul W Wiseman

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 81 citations in OpenAlex.

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  5. Phase-Sensitive Fluorescence Image Correlation Spectroscopy.International journal of molecular sciences · 2024
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  14. New automated single-cell technique for segmentation and quantitation of lipid droplets.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Santiago CostantinoDepartment of Physics, McGill University, Montreal, Quebec, Canada.
Jonathan W D Comeau
David L Kolin
Paul W Wiseman
McGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a comprehensive study of the accuracy and dynamic range of spatial image correlation spectroscopy (ICS) and image cross-correlation spectroscopy (ICCS). We use simulations to model laser scanning microscopy imaging of static subdiffraction limit fluorescent proteins or protein clusters in a cell membrane. The simulation programs allow us to control the spatial imaging sampling variables and the particle population densities and interactions and introduce and vary background and counting noise typical of what is encountered in digital optical microscopy. We systematically calculate how the accuracy of both image correlation methods depends on practical experimental collection parameters and characteristics of the sample. The results of this study provide a guide to appropriately plan spatial image correlation measurements on proteins in biological membranes in real cells. The data presented map regimes where the spatial ICS and ICCS provide accurate results as well as clearly showing the conditions where they systematically deviate from acceptable accuracy. Finally, we compare the simulated data with standard confocal microscopy using live CHO cells expressing the epidermal growth factor receptor fused with green fluorescent protein (GFP/EGFR) to obtain typical values for the experimental variables that were investigated in our study. We used our simulation results to estimate a relative precision of 20% for the ICS measured receptor density of 64 microm(-2) within a 121 x 98 pixel subregion of a single cell.

Indexed as

AlgorithmsModels, BiologicalAnimalsCHO CellsComputer SimulationCricetinaeCricetulusErbB ReceptorsGreen Fluorescent ProteinsImage Interpretation, Computer-AssistedMicroscopy, ConfocalMicroscopy, FluorescenceRecombinant Fusion ProteinsReproducibility of ResultsSensitivity and SpecificitySpectrometry, FluorescenceErbB ReceptorsGreen Fluorescent ProteinsRecombinant Fusion Proteins

Identifiers

PMID15923223
PMCPMC1366609
OpenAlexW2093573350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.