Evidence map›Paper›PMID 15918028›Full record

ArticlePlanta2005

Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus.

Jae-Hoon Lee, Do-Myung Kim, Jeong Hee Lee, Jungmook Kim, Jae Wook Bang, Woo Taek Kim, Hyun-Sook Pai

Abstract read
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In one paragraph

Article in Planta, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

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  5. Horticulture research · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Jae-Hoon LeeDepartment of Biology, Yonsei University, Seoul, 120-749, Korea.
Do-Myung Kim
Jeong Hee Lee
Jungmook Kim
Jae Wook Bang
Woo Taek Kim
Hyun-Sook Pai
Yonsei University · KRChonnam National University · KRChungnam National University · KRKorea Research Institute of Bioscience and Biotechnology · KRMyongji University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using PCR-select cDNA subtraction, we identified the genes that are predominantly expressed in the shooty callus induced by suppression of the CHRK1 receptor-like kinase gene. One of the identified genes encoded a novel AP2/EREBP-type transcription factor, and it was highly expressed in various types of tobacco callus including the CHRK1 transgenic callus, hence designated as Nicotiana tabacum Callus-Expressing Factor 1 NtCEF1. The NtCEF1-GFP fusion protein was localized in the nucleus. The full length and the C-terminal acidic region of NtCEF1 could function as a transactivator in yeast, when fused to the LexA DNA binding domain. Expression of the NtCEF1 gene was induced by ethylene and by various abiotic stresses. Gel retardation assay revealed that NtCEF1 could bind specifically to the GCC box as well as to the C/DRE motif, albeit less strongly. Interestingly, NtCEF1 overexpression in Arabidopsis resulted in constitutive expression of various ethylene-responsive and defense genes that contain the GCC box in the promoter-but none of the genes containing the upstream C/DRE elements-indicating that NtCEF1 preferentially recognizes the GCC box in vivo. Furthermore, the NtCEF1-overexpressing Arabidopsis plants exhibited enhanced resistance to a bacterial pathogen, Pseudomonas syringae pv. tomato DC3000. Taken together, these results suggest that NtCEF1 is a transcription factor preferentially activating the GCC box-containing defense genes, and that it modulates increased resistance against the biotic stress by activation of the downstream gene expression.

Indexed as

Amino Acid SequenceArabidopsisCloning, MolecularGene Expression ProfilingGene Expression Regulation, PlantMolecular Sequence DataNicotianaPhylogenyPlant DiseasesPlant ProteinsPlants, Genetically ModifiedProtein Serine-Threonine KinasesSequence Homology, Amino AcidTranscription FactorsTranscription, GeneticCHRK1 protein, Nicotiana tabacumPlant ProteinsProtein Serine-Threonine KinasesTranscription Factors

Identifiers

PMID15918028
OpenAlexW2163857248

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.