Evidence map›Paper›PMID 15917439›Full record

ArticleNucleic acids research2005

Stimulation of the XPB ATP-dependent helicase by the beta subunit of TFIIE.

Yin C Lin, Jay D Gralla

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Subunit architecture of general transcription factor TFIIH.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  8. Other proteins interacting with XP proteins.Advances in experimental medicine and biology · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yin C LinDepartment of Chemistry and Biochemistry, The Molecular Biology Institute, University of California Los Angeles Los Angeles, CA 90095-1569, USA.
Jay D Gralla
University of California, Los Angeles · US

Funding

NIGMS NIH HHS GM49048
6 · The paper itself

Abstract

TFIIE and TFIIH are essential for the promoter opening and escape that occurs as RNA polymerase II transits into early elongation. XPB, a subunit of TFIIH, contains an ATP-dependent helicase activity that is used in both of these processes. Here, we show that the smaller beta subunit of TFIIE stimulates the XPB helicase and ATPase activities. The larger alpha subunit can use its known inhibitory activity to moderate the stimulation by the beta subunit. Regions of TFIIE beta required for the helicase stimulation were identified. Mutants were constructed that are defective in stimulating the XPB helicase but still allow intact TFIIE to bind and recruit XPB and TFIIH to form the pre-initiation complex. In a test for the functional significance of the stimulatory effect of TFIIE beta, these mutant forms of TFIIE were shown to be defective in a transcription assay on linear DNA. The data suggest that the beta subunit of TFIIE is an ATPase and helicase co-factor that can assist the XPB subunit of TFIIH during transcription initiation and the transition to early elongation, enhancing the potential diversity of regulatory targets.

Indexed as

Transcription, GeneticAdenosine TriphosphatasesDNA-Binding ProteinsDNA HelicasesHeLa CellsHumansMutationProtein Structure, TertiaryProtein SubunitsTranscription Factors, TFIIAdenosine TriphosphatasesDNA-Binding ProteinsDNA HelicasesProtein SubunitsTranscription Factors, TFIItranscription factor TFIIEXPBC-ERCC-3 protein

Identifiers

PMID15917439
PMCPMC1140373
OpenAlexW2052208988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.