Evidence map›Paper›PMID 15908570›Full record

ArticleJournal of medical genetics2006

Disruption of TCBA1 associated with a de novo t(1;6)(q32.2;q22.3) presenting in a child with developmental delay and recurrent infections.

Y Yue, K Stout, B Grossmann, U Zechner, A Brinckmann, C White, D T Pilz, T Haaf

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Journal of medical genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Pure interstitial dup(6)(q22.31q22.31) - a case report.Italian journal of pediatrics · 2015
    Article
  5. The structure and function of NKAIN2-a candidate tumor suppressor.International journal of clinical and experimental medicine · 2015
    Review
  6. Article
  7. Article
  8. Late breaking chromosomes.Molecular syndromology · 2014
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Y YueInstitute for Human Genetics, Johannes Gutenberg University, Mainz, Germany.
K Stout
B Grossmann
U Zechner
A Brinckmann
C White
D T Pilz
T Haaf
Johannes Gutenberg University Mainz · DECardiff and Vale University Health Board · GBCharité - Universitätsmedizin Berlin · DEMax Planck Institute for Molecular Genetics · DEMorriston Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A boy with developmental delay, particularly of speech, a distinct face, antineutrophil cytoplasmic antibodies, and recurrent infections was found to have an apparently balanced de novo t(1;6)(q32.3;q22.3) translocation. Fluorescent in situ hybridisation with BAC/PAC clones and long range polymerase chain reaction products assessed in the human genome sequence localised the chromosome 1 breakpoint to a 9.8 kb segment within a hypothetical gene, LOC388735, and the chromosome 6 breakpoint to a 12.8 kb segment in intron 4 of the T-cell lymphoma breakpoint-associated target 1 (TCBA1) gene. Disruption and/or formation of TCBA1 fusion genes in T cell lymphoma and leukaemia cell lines suggests a role for this gene in tumorigenesis. The isolated mouse Tcba1 gene shows 91% amino acid sequence similarity with human TCBA1. It is expressed in fetal and adult brain and with lower levels in liver and testis. The human gene has been reported to be expressed exclusively in brain and thymus. Reduced TCBA1 expression in brain and thymus may explain at least some of the symptoms in this patient. It is concluded that germline alterations of the TCBA1 gene are associated with developmental delay and typical physical features.

Indexed as

Amino Acid SequenceAnimalsChildChild, PreschoolChromosome BreakageChromosome MappingChromosomes, Human, Pair 1Chromosomes, Human, Pair 6Cytogenetic AnalysisDevelopmental DisabilitiesExonsGene Expression ProfilingGenome, HumanHumansInfectionsMaleMembrane ProteinsNKAIN2 protein, human

Identifiers

PMID15908570
PMCPMC2564632
OpenAlexW2103758282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.