ArticleProceedings of the National Academy of Sciences of the United States of America2005
Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers, 1 of them a synthesis that pooled it.
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Who cites it
121 citing papers in PubMed, 1 synthesis or guideline pooled it, 360 citations in OpenAlex.
- metaXCMS: second-order analysis of untargeted metabolomics data.Analytical chemistry · 2011Pooled it
- From Traditional to Omics-Driven: Emerging Strategies for Isolation, Cultivation, and Identification of Plant Endophytes.Plants (Basel, Switzerland) · 2026Review
- Spatiotemporal regulation of arbuscular mycorrhizal symbiosis at cellular resolution.The Plant cell · 2026Article
- Genome-wide identification of phosphate transporter gene family in Trichoderma harzianum and expression in response to biotic and abiotic stress.Scientific reports · 2026Article
- Beyond phosphate uptake: PT4/PT11 as key functional components linking phosphate acquisition, nutrient exchange, and arbuscule maintenance in arbuscular mycorrhizal symbiosis.Frontiers in plant science · 2026Review
- Molecular and Systems Biology Approaches for Harnessing the Symbiotic Interaction in Mycorrhizal Symbiosis for Grain and Oil Crop Cultivation.International journal of molecular sciences · 2024Review
- Date palm transcriptome analysis provides new insights on changes in response to high salt stress of colonized roots with the endophytic fungusFrontiers in plant science · 2024Article
- Disruption of the riceProceedings of the National Academy of Sciences of the United States of America · 2023Article
- Paraburkholderia phytofirmans PsJN colonization of rice endosphere triggers an atypical transcriptomic response compared to rice native Burkholderia s.l. endophytes.Scientific reports · 2023Article
- LysM receptor-like kinases involved in immunity perceive lipo-chitooligosaccharides in mycotrophic plants.Plant physiology · 2023Article
- Evaluating the underlying physiological and molecular mechanisms in the system of rice intensification performance withFrontiers in plant science · 2023Review
- Symbiotic compatibility between rice cultivars and arbuscular mycorrhizal fungi genotypes affects rice growth and mycorrhiza-induced resistance.Frontiers in plant science · 2023Article
- Quantitative Proteomics at Early Stages of the Symbiotic Interaction Between Oryza sativa and Nostoc punctiforme Reveals Novel Proteins Involved in the Symbiotic Crosstalk.Plant & cell physiology · 2022Article
- Comprehensive Analysis of Transcriptome and Metabolome Elucidates the Molecular Regulatory Mechanism of Salt Resistance in Roots ofJournal of fungi (Basel, Switzerland) · 2022Article
- The Roles of Phosphorus and Nitrogen Nutrient Transporters in the Arbuscular Mycorrhizal Symbiosis.International journal of molecular sciences · 2022Review
- Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.The Plant journal : for cell and molecular biology · 2022Article
- Plant-microbe interactions that have impacted plant terrestrializations.Plant physiology · 2022Review
- Variation in mycorrhizal growth response among a spring wheat mapping population shows potential to breed for symbiotic benefit.Food and energy security · 2022Article
- Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems.The Plant cell · 2022Article
- Abiotic Stress and Belowground Microbiome: The Potential of Omics Approaches.International journal of molecular sciences · 2022Review
61 more citing papers are in PubMed but not listed here.
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Authors and funding
12 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Glomalean fungi induce and colonize symbiotic tissue called arbuscular mycorrhiza on the roots of most land plants. Other fungi also colonize plants but cause disease not symbiosis. Whole-transcriptome analysis using a custom-designed Affymetrix Gene-Chip and confirmation with real-time RT-PCR revealed 224 genes affected during arbuscular mycorrhizal symbiosis. We compared these transcription profiles with those from rice roots that were colonized by pathogens (Magnaporthe grisea and Fusarium moniliforme). Over 40% of genes showed differential regulation caused by both the symbiotic and at least one of the pathogenic interactions. A set of genes was similarly expressed in all three associations, revealing a conserved response to fungal colonization. The responses that were shared between pathogen and symbiont infection may play a role in compatibility. Likewise, the responses that are different may cause disease. Some of the genes that respond to mycorrhizal colonization may be involved in the uptake of phosphate. Indeed, phosphate addition mimicked the effect of mycorrhiza on 8% of the tested genes. We found that 34% of the mycorrhiza-associated rice genes were also associated with mycorrhiza in dicots, revealing a conserved pattern of response between the two angiosperm classes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.