ReviewGenomics, proteomics & bioinformatics2004
A brief review of computational gene prediction methods.
Review in Genomics, proteomics & bioinformatics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
22 citing papers in PubMed.
- De Novo Gene Emergence: Summary, Classification, and Challenges of Current Methods.Genome biology and evolution · 2025Review
- An overview of computational methods for gene prediction in eukaryotes: strengths, limitations, and future directions.Bioinformatics advances · 2025Review
- Evaluation of Different Gene Prediction Tools inJournal of fungi (Basel, Switzerland) · 2023Article
- The conservation of gene models can support genome annotation.The plant genome · 2023Article
- Shining a light on the dark proteome: Non-canonical open reading frames and their encoded miniproteins as a new frontier in cancer biology.Protein science : a publication of the Protein Society · 2023Review
- Multi-Omics Approaches and Resources for Systems-Level Gene Function Prediction in the Plant Kingdom.Plants (Basel, Switzerland) · 2022Review
- Metaproteomics as a tool for studying the protein landscape of human-gut bacterial species.PLoS computational biology · 2022Article
- Complete Genome Sequence of Escherichia Phage 590B, Active against an Extensively Drug-Resistant Uropathogenic Escherichia coli Isolate.Microbiology resource announcements · 2021Article
- CSN: unsupervised approach for inferring biological networks based on the genome alone.BMC bioinformatics · 2020Article
- Immune Suppressive Extracellular Vesicle Proteins ofG3 (Bethesda, Md.) · 2020Article
- CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction.Interdisciplinary sciences, computational life sciences · 2019Article
- Is reliance on an inaccurate genome sequence sabotaging your experiments?PLoS pathogens · 2019Article
- Evolution of the Highly Repetitive PEVK Region of Titin Across Mammals.G3 (Bethesda, Md.) · 2019Article
- Feature selection for gene prediction in metagenomic fragments.BioData mining · 2018Article
- First-generation annotations for the fathead minnow (Pimephales promelas) genome.Environmental toxicology and chemistry · 2017Article
- Short Exon Detection via Wavelet Transform Modulus Maxima.PloS one · 2016Article
- Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction.Computational and structural biotechnology journal · 2016Review
- A two-stage exon recognition model based on synergetic neural network.Computational and mathematical methods in medicine · 2014Article
- The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes.Plant methods · 2009Article
- Generic eukaryotic core promoter prediction using structural features of DNA.Genome research · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the development of genome sequencing for many organisms, more and more raw sequences need to be annotated. Gene prediction by computational methods for finding the location of protein coding regions is one of the essential issues in bioinformatics. Two classes of methods are generally adopted: similarity based searches and ab initio prediction. Here, we review the development of gene prediction methods, summarize the measures for evaluating predictor quality, highlight open problems in this area, and discuss future research directions.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.