Evidence map›Paper›PMID 15897907›Full record

ArticleOncogene2005

Identification of molecular apocrine breast tumours by microarray analysis.

Pierre Farmer, Herve Bonnefoi, Veronique Becette, Michele Tubiana-Hulin, Pierre Fumoleau, Denis Larsimont, Gaetan Macgrogan, Jonas Bergh, David Cameron, Darlene Goldstein and 6 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 359 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
359citing papers in PubMed, 1 pooled it
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

359 citing papers in PubMed, 1 synthesis or guideline pooled it, 752 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Enzalutamide for the Treatment of Androgen Receptor-Expressing Triple-Negative Breast Cancer.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2018
    Trial
  6. Heat shock protein 27 and gross cystic disease fluid protein 15 play critical roles in molecular apocrine breast cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Trial
  7. Trial
  8. Trial
  9. Review
  10. Article
  11. Article
  12. Observational
  13. Article
  14. Article
  15. Article
  16. Review
  17. Journal of virology · 2025
    Article
  18. Review
  19. Article
  20. Hormone Signaling in Breast Development and Cancer.Advances in experimental medicine and biology · 2025
    Review

299 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Pierre FarmerSwiss Institute of Bioinformatics, Lausanne, Switzerland.
Herve Bonnefoi
Veronique Becette
Michele Tubiana-Hulin
Pierre Fumoleau
Denis Larsimont
Gaetan Macgrogan
Jonas Bergh
David Cameron
Darlene Goldstein
Stephan Duss
Anne-Laure Nicoulaz
Cathrin Brisken
Maryse Fiche
Mauro Delorenzi
Richard Iggo
SIB Swiss Institute of Bioinformatics · CHHôpital René Huguenin · FRInstitut Bergonié · FRInstitut Jules Bordet · BEKarolinska Institutet · SESwiss Group For Clinical Cancer Research · CHUniversity Hospital of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous microarray studies on breast cancer identified multiple tumour classes, of which the most prominent, named luminal and basal, differ in expression of the oestrogen receptor alpha gene (ER). We report here the identification of a group of breast tumours with increased androgen signalling and a 'molecular apocrine' gene expression profile. Tumour samples from 49 patients with large operable or locally advanced breast cancers were tested on Affymetrix U133A gene expression microarrays. Principal components analysis and hierarchical clustering split the tumours into three groups: basal, luminal and a group we call molecular apocrine. All of the molecular apocrine tumours have strong apocrine features on histological examination (P=0.0002). The molecular apocrine group is androgen receptor (AR) positive and contains all of the ER-negative tumours outside the basal group. Kolmogorov-Smirnov testing indicates that oestrogen signalling is most active in the luminal group, and androgen signalling is most active in the molecular apocrine group. ERBB2 amplification is commoner in the molecular apocrine than the other groups. Genes that best split the three groups were identified by Wilcoxon test. Correlation of the average expression profile of these genes in our data with the expression profile of individual tumours in four published breast cancer studies suggest that molecular apocrine tumours represent 8-14% of tumours in these studies. Our data show that it is possible with microarray data to divide mammary tumour cells into three groups based on steroid receptor activity: luminal (ER+ AR+), basal (ER- AR-) and molecular apocrine (ER- AR+).

Indexed as

Oligonucleotide Array Sequence AnalysisApocrine GlandsBiopsyBreast NeoplasmsErb-b2 Receptor Tyrosine KinasesFemaleHumansPhenotypeReceptors, AndrogenReceptors, EstrogenSignal TransductionErb-b2 Receptor Tyrosine KinasesReceptors, AndrogenReceptors, Estrogen

Identifiers

PMID15897907
OpenAlexW2147343434

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.