Evidence map›Paper›PMID 15893176›Full record

Trial reportJournal of the American College of Cardiology2005

A common PCSK9 haplotype, encompassing the E670G coding single nucleotide polymorphism, is a novel genetic marker for plasma low-density lipoprotein cholesterol levels and severity of coronary atherosclerosis.

Suet N Chen, Christie M Ballantyne, Antonio M Gotto, Yanli Tan, James T Willerson, Ali J Marian

Open access · greenAbstract readClinical TrialControlled Clinical Trial
In one paragraph

Trial report in Journal of the American College of Cardiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 5 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 5 syntheses or guidelines pooled it, 159 citations in OpenAlex.

  1. Is a PCSK9 Inhibitor Right for Your Patient? A Review of Treatment Data for Individualized Therapy.International journal of environmental research and public health · 2022
    Pooled it
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  6. Trial
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  8. Article
  9. Review
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  13. Low circulating PCSK9 levels inFrontiers in genetics · 2022
    Article
  14. Article
  15. Antibody-Based Therapeutics for Atherosclerosis and Cardiovascular Diseases.International journal of molecular sciences · 2021
    Review
  16. Effect ofThe International journal of angiology : official publication of the International College of Angiology, Inc · 2021
    Review
  17. Article
  18. Article
  19. Frontiers in genetics · 2020
    Review
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Suet N ChenSection of Cardiology, Center for Preventive Cardiology, Department of Medicine, Baylor College of Medicine, Houston, Texas 77030, USA.
Christie M Ballantyne
Antonio M Gotto
Yanli Tan
James T Willerson
Ali J Marian
Baylor College of Medicine · USCornell University · USThe University of Texas Health Science Center at Houston · US

Funding

TUMOR NECROSIS FACTOR-ALPHA IN CONGESTIVE HEART FAILURE--MECHANISMS/RELEVANCEP50HL054313 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MANN, DOUGLAS LOWELL · 1995 to 2004
$8.2M
Modifier Genes of Familial Hypertrophic CardiomyopathyR01HL068884 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MARIAN, ALI J. · 2001 to 2005
$3.2M
NHLBI NIH HHS P50 HL054313NHLBI NIH HHS P50-HL54313NHLBI NIH HHS R01 HL068884NHLBI NIH HHS R01 HL68884
6 · The paper itself

Abstract

objectivesWe sought to determine the effects of PCSK9 variants on plasma low-density lipoprotein cholesterol (LDL-C) levels, severity of coronary atherosclerosis, and response to statin therapy in the Lipoprotein Coronary Atherosclerosis Study (LCAS) population.

backgroundMutations in PCSK9 cause autosomal-dominant hypercholesterolemia. We hypothesized that PCSK9 variants could affect plasma LDL-C in individuals with polygenic hypercholesterolemia.

methodsWe sequenced all 12 exons and boundaries to detect novel polymorphisms, and genotyped 372 subjects in LCAS and 319 subjects in a second independent population for six polymorphisms, including novel leucine repeats, by fluorescently tagged markers. We reconstructed haplotypes using a Bayesian algorithm.

resultsPermutation test results showed statistically significant differences in global haplotype distribution among the tertiles of LDL-C (odds ratio [OR]: 2.36, 95% confidence interval [CI]: 1.90 to 4.32, p = 0.005) and minimum lumen diameter of coronary lesions (OR: 1.83, 95% CI: 1.01 to 3.55, p = 0.045). Regression analysis identified haplotype 3 as an independent determinant of LDL-C levels (adjusted R2 = 2.2%, F = 9.37, p = 0.002). Haplotype structure analysis identified E670G as the determinant variant, exerting a dose effect (GG > EG > EE) and accounting for 3.5% of plasma LDL-C variability (F = 14.6, p < 0.001). Plasma total cholesterol, apolipoprotein B, and lipoprotein (a) levels were also associated with the E670G variant. Distributions of the E670G genotypes in an independent normolipidemic and the hyperlipidemic LCAS populations were significantly different (F = 7.2, p = 0.027). No significant treatment-by-genotype interactions were detected. The false positive report probability was between 2% and 8%.

conclusionsHaplotype 3 encompassing the E670G variant is an independent determinant of plasma LDL-C levels and the severity of coronary atherosclerosis.

Indexed as

HaplotypesAdultAgedAnticholesteremic AgentsCholesterolCholesterol, HDLChromosome AberrationsCoronary Artery DiseaseDNA Mutational AnalysisFatty Acids, MonounsaturatedFemaleFluvastatinGene FrequencyGenes, DominantGenetic MarkersGenetic VariationAnticholesteremic AgentsCholesterolCholesterol, HDLFatty Acids, MonounsaturatedFluvastatinGenetic MarkersIndolesLipoprotein(a)PCSK9 protein, humanProprotein Convertase 9Proprotein ConvertasesSerine EndopeptidasesTriglycerides

Identifiers

PMID15893176
PMCPMC2910256
OpenAlexW2120597207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.