Evidence map›Paper›PMID 15891897›Full record

ArticlePlanta2005

Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins.

Koji Kasai, Takuya Kanno, Mitsuru Akita, Yasuko Ikejiri-Kanno, Kyo Wakasa, Yuzuru Tozawa

Abstract read
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In one paragraph

Article in Planta, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. The Targeted Regulation of BDUbc and BDSKL1 Enhances Resistance to Blight inInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Integrative analysis of grapevine (Frontiers in nutrition · 2023
    Article
  6. Shikimate Kinase Plays Important Roles in Anthocyanin Synthesis in Petunia.International journal of molecular sciences · 2022
    Article
  7. Article
  8. Identification of the interacting proteins ofFrontiers in plant science · 2022
    Article
  9. Article
  10. Genome-wide in silico analysis of long intergenic non-coding RNAs from rice peduncles at the heading stage.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Koji KasaiJapan Science and Technology Agency for Core Research for Evolutional Science and Technology, Kawaguchi 332-0012, Japan.
Takuya Kanno
Mitsuru Akita
Yasuko Ikejiri-Kanno
Kyo Wakasa
Yuzuru Tozawa
Ehime University · JPJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The shikimate pathway is common to the biosynthesis of the three aromatic amino acids and that of various secondary metabolites in land plants. Shikimate kinase (SK; EC 2.7.1.71) catalyzes the phosphorylation of shikimate to yield shikimate 3-phosphate. In an attempt to elucidate the functional roles of enzymes that participate in the shikimate pathway in rice (Oryza sativa), we have now identified and characterized cDNAs corresponding to three SK genes--OsSK1, OsSK2, and OsSK3--in this monocotyledenous plant. These SK cDNAs encode proteins with different NH(2)-terminal regions and with putative mature regions that share sequence similarity with other plant and microbial SK proteins. An in vitro assay of protein import into intact chloroplasts isolated from pea (Pisum sativum) seedlings revealed that the full-length forms of the three rice SK proteins are translocated into chloroplasts and processed, consistent with the assumption that the different NH(2)-terminal sequences function as chloroplast transit peptides. The processed forms of all three rice proteins synthesized in vitro manifested SK catalytic activity. Northern blot analysis revealed that the expression of OsSK1 and OsSK2 was induced in rice calli by treatment with the elicitor N-acetylchitoheptaose, and that expression of OsSK1 and OsSK3 was up-regulated specifically during the heading stage of panicle development. These results suggest that differential expression of the three rice SK genes and the accompanying changes in the production of shikimate 3-phosphate may contribute to the defense response and to panicle development in rice.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceCatalysisChloroplastsCloning, MolecularFlowersGene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicMolecular Sequence DataOryzaPhosphotransferases (Alcohol Group Acceptor)PhylogenySequence Homology, Amino AcidPhosphotransferases (Alcohol Group Acceptor)shikimate kinase

Identifiers

PMID15891897
OpenAlexW2015935603

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.