Evidence map›Paper›PMID 15890958›Full record

ArticleJournal of virology2005

Identification and characterization of the putative fusion peptide of the severe acute respiratory syndrome-associated coronavirus spike protein.

Bruno Sainz, Joshua M Rausch, William R Gallaher, Robert F Garry, William C Wimley

Abstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 1 synthesis or guideline pooled it, 143 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Swine Enteric Coronavirus: Diverse Pathogen-Host Interactions.International journal of molecular sciences · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. [Vaccine against COVID-19].Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia · 2021
    Review
  18. Article
  19. Review
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Bruno SainzDepartment of Microbiology and Immunology, Tulane University Health Sciences Center, 1430 Tulane Avenue, SL-43, New Orleans, LA 70112, USA.
Joshua M Rausch
William R Gallaher
Robert F Garry
William C Wimley
Immunité et Cancer · FRTulane University · USLouisiana State University Health Sciences Center New Orleans · US

Funding

Folding and Design of Beta Sheets in MembranesR01GM060000 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI WIMLEY, WILLIAM C · 2001 to 2010
$2.6M
Primate pilot study: coincident AIDS/relapsing malariaR01RR018229 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI COGSWELL, FRANK B. · 2003 to 2006
$1.0M
Rapid screen for Ebola virus membrane interactions/drugsR01AI054626 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2003 to 2005
$780k
Rapid screen for HIV TM membrane interactions/drugsR21AI054238 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2003 to 2004
$446k
NCI NIH HHS CA08921NCRR NIH HHS R01 RR018229NCRR NIH HHS RR018229NIAID NIH HHS AI054238NIAID NIH HHS AI054626NIAID NIH HHS AIO543818NIAID NIH HHS R01 AI054626NIAID NIH HHS R21 AI054238NIGMS NIH HHS GM60000NIGMS NIH HHS R01 GM060000
6 · The paper itself

Abstract

Severe acute respiratory syndrome-associated coronavirus (SARS-CoV) is a newly identified member of the family Coronaviridae and poses a serious public health threat. Recent studies indicated that the SARS-CoV viral spike glycoprotein is a class I viral fusion protein. A fusion peptide present at the N-terminal region of class I viral fusion proteins is believed to initiate viral and cell membrane interactions and subsequent fusion. Although the SARS-CoV fusion protein heptad repeats have been well characterized, the fusion peptide has yet to be identified. Based on the conserved features of known viral fusion peptides and using Wimley and White interfacial hydrophobicity plots, we have identified two putative fusion peptides (SARS(WW-I) and SARS(WW-II)) at the N terminus of the SARS-CoV S2 subunit. Both peptides are hydrophobic and rich in alanine, glycine, and/or phenylalanine residues and contain a canonical fusion tripeptide along with a central proline residue. Only the SARS(WW-I) peptide strongly partitioned into the membranes of large unilamellar vesicles (LUV), adopting a beta-sheet structure. Likewise, only SARS(WW-I) induced the fusion of LUV and caused membrane leakage of vesicle contents at peptide/lipid ratios of 1:50 and 1:100, respectively. The activity of this synthetic peptide appeared to be dependent on its amino acid (aa) sequence, as scrambling the peptide rendered it unable to partition into LUV, assume a defined secondary structure, or induce both fusion and leakage of LUV. Based on the activity of SARS(WW-I), we propose that the hydrophobic stretch of 19 aa corresponding to residues 770 to 788 is a fusion peptide of the SARS-CoV S2 subunit.

Indexed as

Amino Acid SequenceCircular DichroismIn Vitro TechniquesLiposomesMembrane FusionMembrane GlycoproteinsMembrane LipidsModels, MolecularMolecular Sequence DataPeptide FragmentsProtein Structure, SecondaryProtein SubunitsSevere acute respiratory syndrome-related coronavirusSpike Glycoprotein, CoronavirusViral Envelope ProteinsViral Fusion ProteinsLiposomesMembrane GlycoproteinsMembrane LipidsPeptide FragmentsProtein SubunitsSpike Glycoprotein, CoronavirusViral Envelope ProteinsViral Fusion Proteins

Identifiers

PMID15890958
PMCPMC1112137
OpenAlexW2138237585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.