Evidence map›Paper›PMID 15890701›Full record

ArticleThe Journal of physiology2005

Comparative gene expression profile of mouse carotid body and adrenal medulla under physiological hypoxia.

M D Ganfornina, M T Pérez-García, G Gutiérrez, E Miguel-Velado, J R López-López, A Marín, D Sánchez, C González

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptomics of the Carotid Body.Advances in experimental medicine and biology · 2023
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. KATP Channels in the Cardiovascular System.Physiological reviews · 2016
    Review
  9. Article
  10. Article
  11. Article
  12. Molecular mechanisms of chronic intermittent hypoxia and hypertension.Critical reviews in biomedical engineering · 2012
    Review
  13. Article
  14. Short-term hypoxia increases tyrosine hydroxylase immunoreactivity in rat carotid body.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2010
    Article
  15. Article
  16. Purines, the carotid body and respiration.Respiratory physiology & neurobiology · 2007
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

M D GanforninaDepartamento de Bioquímica y Fisiología y Genética Molecular-IBGM, Universidad de Valladolid-CSIC, 47005 Valladolid, Spain.
M T Pérez-García
G Gutiérrez
E Miguel-Velado
J R López-López
A Marín
D Sánchez
C González
Universidad de Valladolid · ESUniversidad de Sevilla · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The carotid body (CB) is an arterial chemoreceptor, bearing specialized type I cells that respond to hypoxia by closing specific K+ channels and releasing neurotransmitters to activate sensory axons. Despite having detailed information on the electrical and neurochemical changes triggered by hypoxia in CB, the knowledge of the molecular components involved in the signalling cascade of the hypoxic response is fragmentary. This study analyses the mouse CB transcriptional changes in response to low PO2 by hybridization to oligonucleotide microarrays. The transcripts were obtained from whole CBs after mice were exposed to either normoxia (21% O2), or physiological hypoxia (10% O2) for 24 h. The CB transcriptional profiles obtained under these environmental conditions were subtracted from the profile of control non-chemoreceptor adrenal medulla extracted from the same animals. Given the common developmental origin of these two organs, they share many properties but differ specifically in their response to O2. Our analysis revealed 751 probe sets regulated specifically in CB under hypoxia (388 up-regulated and 363 down-regulated). These results were corroborated by assessing the transcriptional changes of selected genes under physiological hypoxia with quantitative RT-PCR. Our microarray experiments revealed a number of CB-expressed genes (e.g. TH, ferritin and triosephosphate isomerase) that were known to change their expression under hypoxia. However, we also found novel genes that consistently changed their expression under physiological hypoxia. Among them, a group of ion channels show specific regulation in CB: the potassium channels Kir6.1 and Kcnn4 are up-regulated, while the modulatory subunit Kcnab1 is down-regulated by low PO2 levels.

Indexed as

Adrenal MedullaAnimalsCarotid BodyCells, CulturedComputational BiologyDNA PrimersFemaleGene ExpressionHypoxiaIn Situ HybridizationMiceMice, Inbred C57BLOligonucleotide Array Sequence AnalysisPotassium ChannelsReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionDNA PrimersPotassium ChannelsRNA, Messenger

Identifiers

PMID15890701
PMCPMC1464746
OpenAlexW1590987895

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.