Evidence map›Paper›PMID 1588954›Full record

ArticleMolecular and cellular biology1992

Nerve growth factor-induced derepression of peripherin gene expression is associated with alterations in proteins binding to a negative regulatory element.

M A Thompson, E Lee, D Lawe, E Gizang-Ginsberg, E B Ziff

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. An intact intermediate filament network is required for collateral sprouting of small diameter nerve fibers.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2003
    Article
  4. Intron 1 is required for cell type-specific, but not injury-responsive, peripherin gene expression.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2002
    Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M A ThompsonDepartment of Biochemistry, Howard Hughes Medical Institute, New York University Medical Center, New York 10016.
E Lee
D Lawe
E Gizang-Ginsberg
E B Ziff
Howard Hughes Medical Institute · US

Funding

RELATIONSHIP BETWEEN ANTIDEPRESSANT THERAPY AND RESISTANCE TO STRESSP50MH035976 · NIMH · NEW YORK UNIVERSITY · PI DIAMOND, FLORENCE · 1985 to 1994
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REGULATION OF CELLULAR GENE ACTIVITY BY ADENOVIRUSR01GM030760 · NIGMS · NEW YORK UNIVERSITY · PI ZIFF, EDWARD B · 1985 to 1990
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NIGMS NIH HHS GM-30760NIMH NIH HHS MH-35976
6 · The paper itself

Abstract

The peripherin gene, which encodes a neuronal-specific intermediate filament protein, is transcriptionally induced with a late time course when nerve growth factor (NGF) stimulates PC12 cells to differentiate into neurons. We have studied its transcriptional regulation in order to better understand the neuronal-specific end steps of the signal transduction pathway of NGF. By 5' deletion mapping of the peripherin promoter, we have localized two positive regulatory elements necessary for full induction by NGF: a distal positive element and a proximal constitutive element within 111 bp of the transcriptional start site. In addition, there is a negative regulatory element (NRE; -179 to -111), the deletion of which results in elevated basal expression of the gene. Methylation interference footprinting of the NRE defined a unique sequence, GGCAGGGCGCC, as the binding site for proteins present in nuclear extracts from both undifferentiated and differentiated PC12 cells. However, DNA mobility shift assays using an oligonucleotide probe containing the footprinted sequence demonstrate a prominent retarded complex in extracts from undifferentiated PC12 cells which migrates with slower mobility than do the complexes produced by using differentiated PC12 cell extract. Transfection experiments using peripherin-chloramphenicol acetyltransferase constructs in which the footprinted sequence has been mutated confirm that the NRE has a functional, though not exclusive, role in repressing peripherin expression in undifferentiated and nonneuronal cells. We propose a two-step model of activation of peripherin by NGF in which dissociation of a repressor from the protein complex at the NRE, coupled with a positive signal from the distal positive element, results in depression of the gene.

Indexed as

Membrane GlycoproteinsNerve Tissue ProteinsAnimalsBase SequenceCell DifferentiationDNA-Binding ProteinsDNA Mutational AnalysisGene Expression RegulationIntermediate Filament ProteinsIn Vitro TechniquesMacromolecular SubstancesMethylationMolecular Sequence DataMutagenesis, Site-DirectedNerve Growth FactorsNeuronsDNA-Binding ProteinsIntermediate Filament ProteinsMacromolecular SubstancesMembrane GlycoproteinsNerve Growth FactorsNerve Tissue ProteinsPeripherinsRepressor ProteinsRNA, Messenger

Identifiers

PMID1588954
PMCPMC364443
OpenAlexW2117538012

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.