ArticlePlant physiology2005
FPC Web tools for rice, maize, and distribution.
Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
16 citing papers in PubMed.
- Genomics and bioinformatics resources for translational science in Rosaceae.Plant biotechnology reports · 2014Review
- Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).G3 (Bethesda, Md.) · 2012Article
- The carotenoid dioxygenase gene family in maize, sorghum, and rice.Archives of biochemistry and biophysics · 2010Article
- From epoxycarotenoids to ABA: the role of ABA 8'-hydroxylases in drought-stressed maize roots.Archives of biochemistry and biophysics · 2010Article
- Metabolite sorting of a germplasm collection reveals the hydroxylase3 locus as a new target for maize provitamin A biofortification.Plant physiology · 2009Article
- Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.Plant physiology · 2009Article
- Timing and biosynthetic potential for carotenoid accumulation in genetically diverse germplasm of maize.Plant physiology · 2009Article
- Integrating sequence with FPC fingerprint maps.Nucleic acids research · 2009Article
- Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.BMC genomics · 2008Article
- Integration of cytogenetic and genetic linkage maps unveils the physical architecture of tomato chromosome 2.Genetics · 2008Article
- Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.Genome biology · 2008Article
- GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data.Nucleic acids research · 2008Article
- Article
- MaizeGDB's new data types, resources and activities.Nucleic acids research · 2007Article
- Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator.Genetics · 2006Article
- Whole-genome validation of high-information-content fingerprinting.Plant physiology · 2005Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Many clone-based physical maps have been built with the FingerPrinted Contig (FPC) software, which is written in C and runs locally for fast and flexible analysis. If the maps were viewable only from FPC, they would not be as useful to the whole community since FPC must be installed on the user machine and the database downloaded. Hence, we have created a set of Web tools so users can easily view the FPC data and perform salient queries with standard browsers. This set includes the following four programs: WebFPC, a view of the contigs; WebChrom, the location of the contigs and genetic markers along the chromosome; WebBSS, locating user-supplied sequence on the map; and WebFCmp, comparing fingerprints. For additional FPC support, we have developed an FPC module for BioPerl and an FPC browser using the Generic Model Organism Project (GMOD) genome browser (GBrowse), where the FPC BioPerl module generates the data files for input into GBrowse. This provides an alternative to the WebChrom/WebFPC view. These tools are available to download along with documentation. The tools have been implemented for both the rice (Oryza sativa) and maize (Zea mays) FPC maps, which both contain the locations of clones, markers, genetic markers, and sequenced clone (along with links to sites that contain additional information).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.