ArticlePlant physiology2005
Databases and information integration for the Medicago truncatula genome and transcriptome.
Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 61 citations in OpenAlex.
- Comparison of structural variants in the whole genome sequences of two Medicago truncatula ecotypes: Jemalong A17 and R108.BMC plant biology · 2022Article
- Early Response to Dehydration Six-Like Transporter Family: Early Origin in Streptophytes and Evolution in Land Plants.Frontiers in plant science · 2021Article
- Transcriptome Analysis of Calcium- and Hormone-Related Gene Expressions during Different Stages of Peanut Pod Development.Frontiers in plant science · 2017Article
- De novo next-generation sequencing, assembling and annotation of Arachis hypogaea L. Spanish botanical type whole plant transcriptome.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- QTL analysis of seed germination and pre-emergence growth at extreme temperatures in Medicago truncatula.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- TNAURice: Database on rice varieties released from Tamil Nadu Agricultural University.Bioinformation · 2010Article
- Integrating sequence with FPC fingerprint maps.Nucleic acids research · 2009Article
- A single gene, AIN, in Medicago truncatula mediates a hypersensitive response to both bluegreen aphid and pea aphid, but confers resistance only to bluegreen aphid.Journal of experimental botany · 2009Article
- SNUGB: a versatile genome browser supporting comparative and functional fungal genomics.BMC genomics · 2008Article
- Recent Advances in Medicago truncatula Genomics.International journal of plant genomics · 2008Article
- Conserved microsynteny of NPR1 with genes encoding a signal calmodulin-binding protein and a CK1-class protein kinase in Beta vulgaris and two other eudicots.International journal of plant genomics · 2008Article
- Identification and characterization of lineage-specific genes within the Poaceae.Plant physiology · 2007Article
- Genome sequencing and genome resources in model legumes.Plant physiology · 2007Review
- MIPSPlantsDB--plant database resource for integrative and comparative plant genome research.Nucleic acids research · 2007Article
- Uneven chromosome contraction and expansion in the maize genome.Genome research · 2006Article
- QTL analysis of seed yield components in red clover (Trifolium pratense L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- Munich information center for protein sequences plant genome resources: a framework for integrative and comparative analyses 1(W).Plant physiology · 2005Article
- Biological databases for plant research.Plant physiology · 2005Article
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Authors and funding
22 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
An international consortium is sequencing the euchromatic genespace of Medicago truncatula. Extensive bioinformatic and database resources support the marker-anchored bacterial artificial chromosome (BAC) sequencing strategy. Existing physical and genetic maps and deep BAC-end sequencing help to guide the sequencing effort, while EST databases provide essential resources for genome annotation as well as transcriptome characterization and microarray design. Finished BAC sequences are joined into overlapping sequence assemblies and undergo an automated annotation process that integrates ab initio predictions with EST, protein, and other recognizable features. Because of the sequencing project's international and collaborative nature, data production, storage, and visualization tools are broadly distributed. This paper describes databases and Web resources for the project, which provide support for physical and genetic maps, genome sequence assembly, gene prediction, and integration of EST data. A central project Web site at medicago.org/genome provides access to genome viewers and other resources project-wide, including an Ensembl implementation at medicago.org, physical map and marker resources at mtgenome.ucdavis.edu, and genome viewers at the University of Oklahoma (www.genome.ou.edu), the Institute for Genomic Research (www.tigr.org), and Munich Information for Protein Sequences Center (mips.gsf.de).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.