Evidence map›Paper›PMID 15886282›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Studies of yeast oligosaccharyl transferase subunits using the split-ubiquitin system: topological features and in vivo interactions.

Aixin Yan, Elain Wu, William J Lennarz

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Frontiers in plant science · 2019
    Article
  4. Single-subunit oligosaccharyltransferases ofThe Journal of biological chemistry · 2017
    Article
  5. Emerging facets of prokaryotic glycosylation.FEMS microbiology reviews · 2017
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Oxidoreductase activity of oligosaccharyltransferase subunits Ost3p and Ost6p defines site-specific glycosylation efficiency.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  11. Dimeric organization of the yeast oligosaccharyl transferase complex.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Aixin YanDepartment of Biochemistry and Cell Biology and Institute for Cell and Developmental Biology, Stony Brook University, Stony Brook, NY 11794, USA.
Elain Wu
William J Lennarz
Stony Brook University · US

Funding

ENZYMATIC CONVERSION OF PROTEINS TO GLYCOPROTEINSR01GM033185 · NIGMS · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI LENNARZ, WILLIAM J · 1985 to 2007
$1.5M
ENZYMATIC CONVERSION OF PROTEINS TO GLYCOPROTEINSR37GM033185 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LENNARZ, WILLIAM J · 1990 to 1999
–
NIGMS NIH HHS GM33185NIGMS NIH HHS R01 GM033185NIGMS NIH HHS R37 GM033185
6 · The paper itself

Abstract

Oligosaccharyl transferase (OT) catalyzes the cotranslational N-glycosylation of nascent polypeptides in the endoplasmic reticulum in all eukaryotic systems. Due to the inherent difficulty in characterizing this membrane protein complex, the mode of enzymatic action has not been resolved. Here, we used a membrane protein two-hybrid approach, the split-ubiquitin system, to address two aspects of the enzyme complex in yeast: the topological features, as well as the in vivo interactions of all of the components. We investigated the N- and C-terminal orientation of these proteins and the presence or the absence of a cleavable signal sequence at their N termini. We found that Ost2p and Stt3p have only their N terminus located in the cytosol, whereas Ost3p and Swp1p have only their C terminus oriented in the cytosol. In the case of Ost5p and Ost6p, both their N and C termini are present in the cytosol. These findings also suggested that Ost2p, Stt3p, Ost5p, and Ost6p do not have a cleavable N-terminal signal sequence. The pairwise analysis of in vivo interactions among all of the OT subunits demonstrated that OT subunits display specific interactions with each other in a functional complex. By comparing this interaction pattern with that detected in vitro in a nonfunctional complex, we proposed that a distinct conformation rearrangement takes place when the enzyme complex changes from the nonfunctional state to the activated functional state. This finding is consistent with earlier work by others indicating that OT exhibits allosteric properties.

Indexed as

Base SequenceCytosolEndoplasmic ReticulumHexosyltransferasesMembrane ProteinsMolecular Sequence DataPlasmidsPolynucleotidesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTwo-Hybrid System TechniquesUbiquitinsdolichyl-diphosphooligosaccharide - protein glycotransferaseHexosyltransferasesMembrane ProteinsPolynucleotidesSaccharomyces cerevisiae ProteinsSTT3 protein, S cerevisiaeUbiquitins

Identifiers

PMID15886282
PMCPMC1129144
OpenAlexW2125429702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.