Evidence map›Paper›PMID 15883837›Full record

ArticleHuman genetics2005

SNPs in the neural cell adhesion molecule 1 gene (NCAM1) may be associated with human neural tube defects.

Kristen L Deak, Abee L Boyles, Heather C Etchevers, Elizabeth C Melvin, Deborah G Siegel, Felicia L Graham, Susan H Slifer, David S Enterline, Timothy M George, Michel Vekemans and 6 more

Open access · greenAbstract read
In one paragraph

Article in Human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Analysis of Genes Associated with Both Neural Tube Defects and Neuroectodermal Tumors.Medical science monitor : international medical journal of experimental and clinical research · 2022
    Article
  6. Latrophilin-3 disruption: Effects on brain and behavior.Neuroscience and biobehavioral reviews · 2021
    Review
  7. Article
  8. Article
  9. Relationship between Single Nucleotide Polymorphisms ofInternational journal of molecular and cellular medicine · 2020
    Article
  10. Article
  11. Review
  12. Genetic studies of myelomeningocele.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2013
    Review
  13. Article
  14. Strain-specific modifier genes governing craniofacial phenotypes.Birth defects research. Part A, Clinical and molecular teratology · 2012
    Article
  15. Review
  16. Article
  17. Genetics of human neural tube defects.Human molecular genetics · 2009
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Kristen L DeakCenter for Human Genetics, Duke University Medical Center, Box 3445, Durham, NC 27710, USA.
Abee L Boyles
Heather C Etchevers
Elizabeth C Melvin
Deborah G Siegel
Felicia L Graham
Susan H Slifer
David S Enterline
Timothy M George
Michel Vekemans
David McClay
Alexander G Bassuk
John A Kessler
Elwood Linney
John R Gilbert
Marcy C Speer
Duke University Hospital · USDuke Medical Center · USNorthwestern University · USCenter for Human Genetics · USHôpital Necker-Enfants Malades · FRInserm · FR

Funding

USE OF DNA PROBE FOR CHOLINERGIC AND NON-CHOLINERGIC MG ANTIGENP01NS026630 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 1989 to 2009
$12.6M
CENTER FOR INVIRONMENATL GENOMICSU19ES011375 · NIEHS · DUKE UNIVERSITY · PI LINNEY, ELWOOD ALBERT · 2001 to 2006
$8.8M
The Hereditary Basis of Neural Tube DefectsR01NS039818 · NINDS · DUKE UNIVERSITY · PI ASHLEY-KOCH, ALLISON E · 1999 to 2008
$6.8M
NEURAL TUBE DEFECTSP01HD039948 · NICHD · DUKE UNIVERSITY · PI MC CLAY, DAVID R · 2001 to 2005
$5.2M
REGULATION OF NEUROTRANSMITTER METABOLISMR01NS020778 · NINDS · YESHIVA UNIVERSITY · PI KESSLER, JOHN A · 1985 to 2014
$4.6M
MECHANISMS GOVERNING NEURONAL DEVELOPMENTR01NS020013 · NINDS · YESHIVA UNIVERSITY · PI KESSLER, JOHN A · 1985 to 2013
$4.1M
Research Core 3: Environmental Health PolicyP30ES011961 · NIEHS · DUKE UNIVERSITY · PI DI GIULIO, RICHARD · 2004 to 2009
$4.1M
NICHD NIH HHS HD 39948NICHD NIH HHS P01 HD039948NIEHS NIH HHS ES 011961NIEHS NIH HHS ES 11375NIEHS NIH HHS P30 ES011961NIEHS NIH HHS U19 ES011375NINDS NIH HHS NS 26630NINDS NIH HHS NS 39818NINDS NIH HHS P01 NS026630NINDS NIH HHS R01 NS020013NINDS NIH HHS R01 NS020778NINDS NIH HHS R01 NS039818
6 · The paper itself

Abstract

Neural tube defects (NTDs) are common birth defects, occurring in approximately 1/1,000 births; both genetic and environmental factors are implicated. To date, no major genetic risk factors have been identified. Throughout development, cell adhesion molecules are strongly implicated in cell-cell interactions, and may play a role in the formation and closure of the neural tube. To evaluate the role of neural cell adhesion molecule 1 (NCAM1) in risk of human NTDs, we screened for novel single-nucleotide polymorphisms (SNPs) within the gene. Eleven SNPs across NCAM1 were genotyped using TaqMan. We utilized a family-based approach to evaluate evidence for association and/or linkage disequilibrium. We evaluated American Caucasian simplex lumbosacral myelomeningocele families (n=132 families) using the family based association test (FBAT) and the pedigree disequilibrium test (PDT). Association analysis revealed a significant association between risk for NTDs and intronic SNP rs2298526 using both the FBAT test (P=0.0018) and the PDT (P=0.0025). Using the HBAT version of the FBAT to look for haplotype association, all pairwise comparisons with SNP rs2298526 were also significant. A replication study set, consisting of 72 additional families showed no significant association; however, the overall trend for overtransmission of the less common allele of SNP rs2298526 remained significant in the combined sample set. In addition, we analyzed the expression pattern of the NCAM1 protein in human embryos, and while NCAM1 is not expressed within the neural tube at the time of closure, it is expressed in the surrounding and later in differentiated neurons of the CNS. These results suggest variations in NCAM1 may influence risk for human NTDs.

Indexed as

Polymorphism, Single NucleotideGene Expression Regulation, DevelopmentalHaplotypesHumansIntronsLinkage DisequilibriumMeningoceleNeural Cell Adhesion MoleculesPedigreeSpinal CordNeural Cell Adhesion Molecules

Identifiers

PMID15883837
PMCPMC3130962
OpenAlexW2026837821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.