ArticleMolecular genetics and genomics : MGG2005
A candidate autonomous version of the wheat MITE Hikkoshi is present in the rice genome.
Article in Molecular genetics and genomics : MGG, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae.Genome biology and evolution · 2014Article
- BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space.Plant molecular biology · 2011Article
- Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.).Genome biology and evolution · 2009Article
- Genome-wide analysis of the Fusarium oxysporum mimp family of MITEs and mobilization of both native and de novo created mimps.Journal of molecular evolution · 2008Article
- Rice transposable elements are characterized by various methylation environments in the genome.BMC genomics · 2007Article
- Transposition of a fungal miniature inverted-repeat transposable element through the action of a Tc1-like transposase.Genetics · 2007Article
- Article
- Mutations in wheat starch synthase II genes and PCR-based selection of a SGP-1 null line.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
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4 authors.
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No grant is acknowledged in the PubMed record.
Abstract
A miniature inverted-repeat transposable element (MITE), designated as Hikkoshi, was previously identified in the null Wx-A1 allele of Turkish bread wheat lines. This MITE is 165 bp in size and has 12-bp terminal inverted repeats (TIRs) flanked by 8-bp target site duplications (TSDs). Southern and PCR analyses demonstrated the presence of multiple copies of Hikkoshi in the wheat genome. Database searches indicated that Hikkoshi MITEs are also present in barley, rice and maize. A 3.4-kb element that has Hikkoshi-like TIRs flanked by 8-bp TSDs has now been identified in the rice genome. This element shows high similarity to the 5' subterminal region of the wheat Hikkoshi MITE and contains a transposase (TPase) coding region. The TPase has two conserved domains, ZnF_TTF and hATC, and its amino acid sequence shows a high degree of homology to TPases encoded by Tip100 transposable elements belonging to the hAT superfamily. We designated the 3.4-kb element as OsHikkoshi. Several wheat clones deposited in EST databases showed sequence similarity to the TPase ORF of OsHikkoshi. The sequence information from the TPase of OsHikkoshi will thus be useful in isolating the autonomous element of the Hikkoshi system from wheat.
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