Evidence map›Paper›PMID 15882867›Full record

ArticleJournal of immunological methods2005

Real-time PCR method for the quantitative analysis of human T-cell receptor gamma and beta gene rearrangements.

J L Chain, M L Joachims, S W Hooker, A B Laurent, C K Knott-Craig, L F Thompson

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of immunological methods, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Reversing T cell immunosenescence: why, who, and how.Age (Dordrecht, Netherlands) · 2013
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

J L ChainImmunobiology and Cancer Program, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA.
M L Joachims
S W Hooker
A B Laurent
C K Knott-Craig
L F Thompson
Oklahoma Medical Research Foundation · USUniversity of Oklahoma Health Sciences Center · US

Funding

Molecular Basis of Immunity - Kirschtein-NRSAT32AI007633 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CUNNINGHAM, MADELEINE W. · 2001 to 2022
$4.0M
The Regulation of Inflammatory Responses by CD73R01AI018220 · NIAID · SCRIPPS CLINIC AND RESEARCH FOUNDATION · PI THOMPSON, LINDA F · 1985 to 2012
$3.1M
MOLECULAR ASPECTS OF HUMAN LYMPHOPOIESISP01AI045864 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI THOMPSON, LINDA F. · 1999 to 2002
$2.5M
ADENOSINE DEAMINASE DEFICIENCYR01HD036044 · NICHD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI THOMPSON, LINDA F. · 1998 to 2007
$1.6M
MOLECULAR EVENTS IN HUMAN GAMMA-DELTA T CELL COMMITMENTF32HD008709 · NICHD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JOACHIMS, MICHELLE L · 2001 to 2003
$142k
NIAID NIH HHS AI45864NIAID NIH HHS R01 AI018220NIAID NIH HHS T32 AI007633NIAID NIH HHS T32 AI07633NICHD NIH HHS F32 HD008709NICHD NIH HHS F32 HD08709NICHD NIH HHS HD36044NICHD NIH HHS R01 HD036044
6 · The paper itself

Abstract

Analyzing the status of T-cell receptor (TCR) gene rearrangements has been an essential part of deciphering the stages of thymocyte development, understanding the alphabeta vs. gammadelta lineage decision, and characterizing T-cell leukemias. Methods such as PCR and quantitative Southern blotting provide useful information, but also have significant shortcomings such as lack of quantitation in the case of PCR and technical challenges in the case of Southern blotting. Here we describe a real-time PCR method that overcomes many of these shortcomings. This new method shows comparable results for the fraction of unrearranged TCRgamma and TCRbeta genes in human thymocytes and peripheral blood T cells as Southern blotting, and has the advantages of being simple to perform, highly quantitative, and requiring nanogram quantities of DNA. We also describe a real-time PCR method to quantitate T-cell receptor excision circles formed during TCRbeta rearrangements.

Indexed as

Gene Rearrangement, beta-Chain T-Cell Antigen ReceptorGene Rearrangement, gamma-Chain T-Cell Antigen ReceptorBase SequenceBlotting, SouthernChildDNADNA PrimersDNA ProbesHumansInfantMolecular Probe TechniquesPolymerase Chain ReactionT-LymphocytesDNADNA PrimersDNA Probes

Identifiers

PMID15882867
PMCPMC1828693
OpenAlexW2081016495

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.