ArticleGenetics2005
Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile.
Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
20 citing papers in PubMed, 59 citations in OpenAlex.
- Chromosome and Genome Diversity in the GenusPlants (Basel, Switzerland) · 2021Review
- Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean.Genome biology · 2019Article
- Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016Article
- Distribution of new satellites and simple sequence repeats in annual and perennial Glycine species.Botanical studies · 2015Article
- Punctuated distribution of recombination hotspots and demarcation of pericentromeric regions in Phaseolus vulgaris L.PloS one · 2015Article
- Hidden magicians of genome evolution.The Indian journal of medical research · 2013Review
- Identification of high-quality single-nucleotide polymorphisms in Glycine latifolia using a heterologous reference genome sequence.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Fluorescence in situ hybridization-based karyotyping of soybean translocation lines.G3 (Bethesda, Md.) · 2011Article
- Article
- Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010Article
- FIDEL-a retrovirus-like retrotransposon and its distinct evolutionary histories in the A- and B-genome components of cultivated peanut.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010Article
- Divergence in centromere structure distinguishes related genomes in Coix lacryma-jobi and its wild relative.Chromosoma · 2010Article
- Genome sequence of the palaeopolyploid soybean.Nature · 2010Article
- Molecular and chromosomal evidence for allopolyploidy in soybean.Plant physiology · 2009Article
- Dynamic rearrangements determine genome organization and useful traits in soybean.Plant physiology · 2009Article
- Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.Plant physiology · 2008Article
- The soybean-Phytophthora resistance locus Rps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences.BMC plant biology · 2008Article
- Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.BMC genomics · 2007Article
- Article
- Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps.Genetics · 2006Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Little is known about the physical makeup of heterochromatin in the soybean (Glycine max L. Merr.) genome. Using DNA sequencing and molecular cytogenetics, an initial analysis of the repetitive fraction of the soybean genome is presented. BAC 076J21, derived from linkage group L, has sequences conserved in the pericentromeric heterochromatin of all 20 chromosomes. FISH analysis of this BAC and three subclones on pachytene chromosomes revealed relatively strict partitioning of the heterochromatic and euchromatic regions. Sequence analysis showed that this BAC consists primarily of repetitive sequences such as a 102-bp tandem repeat with sequence identity to a previously characterized approximately 120-bp repeat (STR120). Fragments of Calypso-like retroelements, a recently inserted SIRE1 element, and a SIRE1 solo LTR were present within this BAC. Some of these sequences are methylated and are not conserved outside of G. max and G. soja, a close relative of soybean, except for STR102, which hybridized to a restriction fragment from G. latifolia. These data present a picture of the repetitive fraction of the soybean genome that is highly concentrated in the pericentromeric regions, consisting of rapidly evolving tandem repeats with interspersed retroelements.
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