ReviewArchaea (Vancouver, B.C.)2005
Identification of replication origins in archaeal genomes based on the Z-curve method.
Review in Archaea (Vancouver, B.C.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
40 citing papers in PubMed, 92 citations in OpenAlex.
- Circ-LocNet: A Computational Framework for Circular RNA Sub-Cellular Localization Prediction.International journal of molecular sciences · 2022Article
- Novel metrics for quantifying bacterial genome composition skews.BMC genomics · 2018Article
- Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism.Genome biology and evolution · 2018Article
- Application of discrete wavelet transform for analysis of genomic sequences of Mycobacterium tuberculosis.SpringerPlus · 2016Article
- Choosing a suitable method for the identification of replication origins in microbial genomes.Frontiers in microbiology · 2015Review
- Editorial: DNA Replication Origins in Microbial Genomes.Frontiers in microbiology · 2015Article
- Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.Standards in genomic sciences · 2015Article
- Bacteria may have multiple replication origins.Frontiers in microbiology · 2015Article
- Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal.BMC genomics · 2014Article
- Recent Advances in the Identification of Replication Origins Based on the Z-curve Method.Current genomics · 2014Article
- A Brief Review: The Z-curve Theory and its Application in Genome Analysis.Current genomics · 2014Article
- Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.Extremophiles : life under extreme conditions · 2014Article
- Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea.Extremophiles : life under extreme conditions · 2014Article
- Diversity of the DNA replication system in the Archaea domain.Archaea (Vancouver, B.C.) · 2014Review
- Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes.Frontiers in microbiology · 2014Article
- Archaeology of eukaryotic DNA replication.Cold Spring Harbor perspectives in biology · 2013Review
- Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon.Open biology · 2013Article
- DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes.Nucleic acids research · 2013Article
- Recognition of prokaryotic promoters based on a novel variable-window Z-curve method.Nucleic acids research · 2012Article
- Complete genome sequence of the marine fish pathogen Vibrio anguillarum harboring the pJM1 virulence plasmid and genomic comparison with other virulent strains of V. anguillarum and V. ordalii.Infection and immunity · 2011Article
Corrections and comments
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Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Z-curve is a three-dimensional curve that constitutes a unique representation of a DNA sequence, i.e., both the Z-curve and the given DNA sequence can be uniquely reconstructed from the other. We employed Z-curve analysis to identify one replication origin in the Methanocaldococcus jannaschii genome, two replication origins in the Halobacterium species NRC-1 genome and one replication origin in the Methanosarcina mazei genome. One of the predicted replication origins of Halobacterium species NRC-1 is the same as a replication origin later identified by in vivo experiments. The Z-curve analysis of the Sulfolobus solfataricus P2 genome suggested the existence of three replication origins, which is also consistent with later experimental results. This review aims to summarize applications of the Z-curve in identifying replication origins of archaeal genomes, and to provide clues about the locations of as yet unidentified replication origins of the Aeropyrum pernix K1, Methanococcus maripaludis S2, Picrophilus torridus DSM 9790 and Pyrobaculum aerophilum str. IM2 genomes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.