Evidence map›Paper›PMID 15876353›Full record

ArticleBMC biochemistry2005

Stimulation of Myc transactivation by the TATA binding protein in promoter-reporter assays.

John F Barrett, Linda A Lee, Chi V Dang

Open access · hybridAbstract readComparative Study
In one paragraph

Article in BMC biochemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Multiple direct interactions of TBP with the MYC oncoprotein.Nature structural & molecular biology · 2019
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

John F BarrettDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA. jbarret1@jhmi.edu
Linda A Lee
Chi V Dang
Johns Hopkins Medicine · US

Funding

MYC--TRANSCRIPTION AND INTERACTION WITH P107R01CA051497 · NCI · WISTAR INSTITUTE · PI DANG, CHI V. · 1995 to 2025
$5.3M
C MYC--TRANSCRIPTION AND APOPTOSISR37CA051497 · NCI · JOHNS HOPKINS UNIVERSITY · PI DANG, CHI V. · 1999 to 2006
$2.8M
MOLECULAR &ONCOLOGIC VIROLOGY TRAINING PROGRAMT32CA009159 · NCI · YALE UNIVERSITY · PI DIMAIO, DANIEL · 1985 to 2005
$1.7M
FUNCTIONAL DOMAINS OF C-MYC PROTEINR29CA051497 · NCI · JOHNS HOPKINS UNIVERSITY · PI DANG, CHI V. · 1990 to 1994
–
NCI NIH HHS CA09159NCI NIH HHS CA 51497NCI NIH HHS R01 CA051497NCI NIH HHS R37 CA051497NCI NIH HHS T32 CA009159
6 · The paper itself

Abstract

backgroundThe c-Myc oncogenic transcription factor heterodimerizes with Max, binds specific DNA sites and regulates transcription. The role of Myc in transcriptional activation involves its binding to TRRAP and histone acetylases; however, Myc's ability to activate transcription in transient transfection assays is remarkably weak (2 to 5 fold) when compared to other transcription factors. Since a deletion Myc mutant D106-143 and a substitution mutant W135E that weakly binds TRRAP are still fully active in transient transfection reporter assays and the TATA binding protein (TBP) has been reported to directly bind Myc, we sought to determine the effect of TBP on Myc transactivation.

resultsWe report here a potent stimulation of Myc transactivation by TBP, allowing up to 35-fold transactivation of reporter constructs. Although promoters with an initiator (InR) element briskly responded to Myc transactivation, the presence of an InR significantly diminished the response to increasing amounts of TBP. We surmise from these findings that promoters containing both TATA and InR elements may control Myc responsive genes that require brisk increased expression within a narrow window of Myc levels, independent of TBP. In contrast, promoters driven by the TATA element only, may also respond to modulation of TBP activity or levels.

conclusionOur observations not only demonstrate that TBP is limiting for Myc transactivation in transient transfection experiments, but they also suggest that the inclusion of TBP in Myc transactivation assays may further improve the characterization of c-Myc target genes.

Indexed as

AnimalsBinding SitesCHO CellsCricetinaeGenes, mycMiceNIH 3T3 CellsPromoter Regions, GeneticTATA-Box Binding ProteinTranscriptional ActivationTATA-Box Binding Protein

Identifiers

PMID15876353
PMCPMC1145180
OpenAlexW1562712572

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.