Evidence map›Paper›PMID 15875012›Full record

ArticleNature2005

The genome of the social amoeba Dictyostelium discoideum.

L Eichinger, J A Pachebat, G Glöckner, M-A Rajandream, R Sucgang, M Berriman, J Song, R Olsen, K Szafranski, Q Xu and 87 more

Abstract read
In one paragraph

Article in Nature, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 632 papers.

0numbers the graph read from it
0cells of the map it votes in
632citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

632 citing papers in PubMed.

  1. Article
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  4. Review
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  6. Review
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  8. Queue Gaps Among the IQGAPs inInternational journal of molecular sciences · 2026
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  19. Inhibition of mitochondrial dynamics inFrontiers in cell and developmental biology · 2026
    Article
  20. Article

572 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

97 authors.

L EichingerCenter for Biochemistry and Center for Molecular Medicine Cologne, University of Cologne, Joseph-Stelzmann-Str. 52, 50931 Cologne, Germany.
J A Pachebat
G Glöckner
M-A Rajandream
R Sucgang
M Berriman
J Song
R Olsen
K Szafranski
Q Xu
B Tunggal
S Kummerfeld
M Madera
B A Konfortov
F Rivero
A T Bankier
R Lehmann
N Hamlin
R Davies
P Gaudet
P Fey
K Pilcher
G Chen
D Saunders
E Sodergren
P Davis
A Kerhornou
X Nie
N Hall
C Anjard
L Hemphill
N Bason
P Farbrother
B Desany
E Just
T Morio
R Rost
C Churcher
J Cooper
S Haydock
N van Driessche
A Cronin
I Goodhead
D Muzny
T Mourier
A Pain
M Lu
D Harper
R Lindsay
H Hauser
K James
M Quiles
M Madan Babu
T Saito
C Buchrieser
A Wardroper
M Felder
M Thangavelu
D Johnson
A Knights
H Loulseged
K Mungall
K Oliver
C Price
M A Quail
H Urushihara
J Hernandez
E Rabbinowitsch
D Steffen
M Sanders
J Ma
Y Kohara
S Sharp
M Simmonds
S Spiegler
A Tivey
S Sugano
B White
D Walker
J Woodward
T Winckler
Y Tanaka
G Shaulsky
M Schleicher
G Weinstock
A Rosenthal
E C Cox
R L Chisholm
R Gibbs
W F Loomis
M Platzer
R R Kay
J Williams
P H Dear
A A Noegel
B Barrell
A Kuspa

Funding

SEQUENCING THE DICTYOSTELIUM GENOMER01HD035925 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI KUSPA, ADAM · 1998 to 2004
$5.1M
Medical Research Council MC_U105115237NICHD NIH HHS R01 HD035925Wellcome Trust
6 · The paper itself

Abstract

The social amoebae are exceptional in their ability to alternate between unicellular and multicellular forms. Here we describe the genome of the best-studied member of this group, Dictyostelium discoideum. The gene-dense chromosomes of this organism encode approximately 12,500 predicted proteins, a high proportion of which have long, repetitive amino acid tracts. There are many genes for polyketide synthases and ABC transporters, suggesting an extensive secondary metabolism for producing and exporting small molecules. The genome is rich in complex repeats, one class of which is clustered and may serve as centromeres. Partial copies of the extrachromosomal ribosomal DNA (rDNA) element are found at the ends of each chromosome, suggesting a novel telomere structure and the use of a common mechanism to maintain both the rDNA and chromosomal termini. A proteome-based phylogeny shows that the amoebozoa diverged from the animal-fungal lineage after the plant-animal split, but Dictyostelium seems to have retained more of the diversity of the ancestral genome than have plants, animals or fungi.

Indexed as

GenomeGenomicsSocial BehaviorAnimalsATP-Binding Cassette TransportersBase CompositionCell AdhesionCell MovementCentromereConserved SequenceDictyosteliumDNA, RibosomalDNA Transposable ElementsEukaryotic CellsGene DuplicationGene Transfer, HorizontalATP-Binding Cassette TransportersDNA, RibosomalDNA Transposable ElementsProteomeProtozoan ProteinsRNA, Transfer

Identifiers

PMID15875012
PMCPMC1352341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.