Evidence map›Paper›PMID 15872084›Full record

ArticleMolecular biology of the cell2005

The organization of the core proteins of the yeast spindle pole body.

Eric G D Muller, Brian E Snydsman, Isabella Novik, Dale W Hailey, Daniel R Gestaut, Christine A Niemann, Eileen T O'Toole, Tom H Giddings, Bryan A Sundin, Trisha N Davis

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
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  11. Article
  12. FRET Microscopy in Yeast.Biosensors · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. AI-Assisted Forward Modeling of Biological Structures.Frontiers in cell and developmental biology · 2019
    Article
  18. Article
  19. Article
  20. Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Eric G D MullerDepartment of Biochemistry, University of Washington, Seattle, WA 98195-7350, USA. emuller@u.washington.edu
Brian E Snydsman
Isabella Novik
Dale W Hailey
Daniel R Gestaut
Christine A Niemann
Eileen T O'Toole
Tom H Giddings
Bryan A Sundin
Trisha N Davis
University of Washington · USUniversity of Colorado Boulder · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
WORKSHOPS AND TRAINING FOR IMAGE ANALYSIS USING IMODP41RR000592 · NCRR · UNIVERSITY OF COLORADO AT BOULDER · PI BASS, PETER W. · 1985 to 2011
$11.9M
MOLECULAR ANALYSIS OF THE SPINDLE POLE BODYR01GM040506 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVIS, TRISHA N. · 1988 to 2018
$8.6M
NCRR NIH HHS P41 RR000592NCRR NIH HHS P41 RR011823NCRR NIH HHS P41 RR 11823NCRR NIH HHS RR-00592NIGMS NIH HHS R01 GM040506NIGMS NIH HHS R01 GM40506
6 · The paper itself

Abstract

The spindle pole body (SPB) is the microtubule organizing center of Saccharomyces cerevisiae. Its core includes the proteins Spc42, Spc110 (kendrin/pericentrin ortholog), calmodulin (Cmd1), Spc29, and Cnm67. Each was tagged with CFP and YFP and their proximity to each other was determined by fluorescence resonance energy transfer (FRET). FRET was measured by a new metric that accurately reflected the relative extent of energy transfer. The FRET values established the topology of the core proteins within the architecture of SPB. The N-termini of Spc42 and Spc29, and the C-termini of all the core proteins face the gap between the IL2 layer and the central plaque. Spc110 traverses the central plaque and Cnm67 spans the IL2 layer. Spc42 is a central component of the central plaque where its N-terminus is closely associated with the C-termini of Spc29, Cmd1, and Spc110. When the donor-acceptor pairs were ordered into five broad categories of increasing FRET, the ranking of the pairs specified a unique geometry for the positions of the core proteins, as shown by a mathematical proof. The geometry was integrated with prior cryoelectron tomography to create a model of the interwoven network of proteins within the central plaque. One prediction of the model, the dimerization of the calmodulin-binding domains of Spc110, was confirmed by in vitro analysis.

Indexed as

Spindle ApparatusCalmodulinCalmodulin-Binding ProteinsCentriolesCryoelectron MicroscopyCytoskeletal ProteinsDimerizationFluorescence Resonance Energy TransferFungal ProteinsGreen Fluorescent ProteinsIn Vitro TechniquesMicroscopy, ElectronMicroscopy, FluorescenceMicrotubule-Associated ProteinsModels, BiologicalModels, MolecularCalmodulinCalmodulin-Binding ProteinsCMD1 protein, S cerevisiaeCyan Fluorescent ProteinCytoskeletal ProteinsFungal ProteinsGreen Fluorescent ProteinsMicrotubule-Associated ProteinsNuclear ProteinsSaccharomyces cerevisiae ProteinsSPC110 protein, S cerevisiaeSpc29 protein, S cerevisiae

Identifiers

PMID15872084
PMCPMC1165416
OpenAlexW2136125398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.