Evidence map›Paper›PMID 15871050›Full record

ArticleJournal of molecular evolution2005

The population genetics of the alpha-2 globin locus of orangutans (Pongo pygmaeus).

Michael E Steiper, Nathan D Wolfe, William B Karesh, Annelisa M Kilbourn, Edwin J Bosi, Maryellen Ruvolo

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Naturally acquired immunity toParasitology · 2024
    Article
  2. Article
  3. The SLC4A1 gene is under differential selective pressure in primates infected by Plasmodium falciparum and related parasites.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Michael E SteiperDepartment of Anthropology, Hunter College-City University of New York, New York, 10021, USA. msteiper@hunter.cuny.edu
Nathan D Wolfe
William B Karesh
Annelisa M Kilbourn
Edwin J Bosi
Maryellen Ruvolo
Wildlife Conservation Society · USCity University of New York · USHarvard University · USJohns Hopkins University · USSabah Wildlife Department · MY

Funding

NCRR NIH HHS RR-03037
6 · The paper itself

Abstract

In this study, the molecular population genetics of the orangutan's alpha-2 globin (HBA2) gene were investigated in order to test for the action of natural selection. Haplotypes from 28 orangutan chromosomes were collected from a 1.46-kilobase region of the alpha-2 globin locus. While many aspects of the data were consistent with neutrality, the observed heterogeneous distribution of polymorphisms was inconsistent with neutral expectations. Furthermore, a single amino acid variant, found in both the Bornean and the Sumatran orangutan subspecies, was associated with different alternative synonymous variants in each subspecies, suggesting that the allele may have spread separately through the two subspecies after two distinct origination events. This variant is not in Hardy-Weinberg equilibrium (HWE). These observations are consistent with neutral models that incorporate population structure and models that invoke selection. The orangutan Plasmodium parasite is a plausible selective agent that may underlie the variation at alpha-2 globin in orangutans.

Indexed as

Genetics, PopulationModels, GeneticPlasmodiumPongo pygmaeusAnimalsApe DiseasesBase SequenceDNA PrimersGene ComponentsGlobinsHaplotypesIndonesiaLinkage DisequilibriumMalariaMicrosatellite RepeatsMolecular Sequence DataDNA PrimersGlobins

Identifiers

PMID15871050
OpenAlexW2047812133

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.