Evidence map›Paper›PMID 15866879›Full record

ArticleThe Journal of biological chemistry2005

The ATPase activity of BfpD is greatly enhanced by zinc and allosteric interactions with other Bfp proteins.

Lynette J Crowther, Atsushi Yamagata, Lisa Craig, John A Tainer, Michael S Donnenberg

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in The Journal of biological chemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Type IV pili: paradoxes in form and function.Current opinion in structural biology · 2008
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lynette J CrowtherDivision of Infectious Diseases, Department of Medicine, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Atsushi Yamagata
Lisa Craig
John A Tainer
Michael S Donnenberg
Scripps Research Institute · USUniversity of Maryland, Baltimore · US

Funding

Structure and Assembly of Type IV Pili &Related SystemsR01AI022160 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI TAINER, JOHN A. · 1985 to 2009
$3.2M
MOLECULAR BASIS OF LOCALIZED ADHERENCE IN E. COLIR01AI037606 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI DONNENBERG, MICHAEL S · 1995 to 2009
$2.5M
NIAID NIH HHS AI22160NIAID NIH HHS R01 AI022160NIAID NIH HHS R01 AI037606NIAID NIH HHS R01 AI-37606
6 · The paper itself

Abstract

Type IV pilus biogenesis, protein secretion, DNA transfer, and filamentous phage morphogenesis systems are thought to possess similar architectures and mechanisms. These multiprotein complexes include members of the PulE superfamily of putative NTPases that have extensive sequence similarity and probably similar functions as the energizers of macromolecular transport. We purified the PulE homologue BfpD of the enteropathogenic Escherichia coli bundle-forming pilus (BFP) biogenesis machine and characterized its ATPase activity, providing new insights into its mode of action. Numerous techniques revealed that BfpD forms hexamers in the presence of nucleotide. Hexameric BfpD displayed weak ATPase activity. We previously demonstrated that the N termini of membrane proteins BfpC and BfpE recruit BfpD to the cytoplasmic membrane. Here, we identified two BfpD-binding sites, BfpE(39-76) and BfpE(77-114), in the N terminus of BfpE using a yeast two-hybrid system. Isothermal titration calorimetry and protease sensitivity assays showed that hexameric BfpD-ATPgammaS binds to BfpE(77-114), whereas hexameric BfpD-ADP binds to BfpE(39-76). Interestingly, the N terminus of BfpC and BfpE(77-114) together increased the ATPase activity of hexameric BfpD over 1200-fold to a V(max) of 75.3 mumol of P(i) min(-1) mg(-1), which exceeds by over 1200-fold the activity of other PulE family members. This augmented activity occurred only in the presence of Zn(2+). We conclude that allosteric interactions between BfpD and BfpC and BfpE dramatically stimulate its ATPase activity. The differential nucleotide-dependent binding of hexameric BfpD to BfpE(39-76) and BfpE(77-114) suggests a model for the mechanism by which BfpD transduces mechanical energy to the biogenesis machine.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAllosteric SiteCalorimetryCationsChromatography, GelCryoelectron MicroscopyCytoplasmDNA PrimersDose-Response Relationship, DrugEndopeptidase KEscherichia coliEscherichia coli ProteinsFimbriae, BacterialKineticsLightadenosine 5'-O-(3-thiotriphosphate)Adenosine TriphosphatasesAdenosine TriphosphateBfpC protein, E coliBfpD protein, E coliBfpE protein, E coliCationsDNA PrimersEndopeptidase KEscherichia coli ProteinsMembrane ProteinsMultienzyme ComplexesZinc

Identifiers

PMID15866879
PMCPMC1224739
OpenAlexW2068602175

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.