Evidence map›Paper›PMID 15863725›Full record

ArticleNucleic acids research2005

Selenocysteine insertion directed by the 3'-UTR SECIS element in Escherichia coli.

Dan Su, Yehua Li, Vadim N Gladyshev

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Engineered mRNA-ribosome fusions for facile biosynthesis of selenoproteins.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Review
  5. Why Selenocysteine Is Unique?Frontiers in molecular biosciences · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Selenium utilization in thioredoxin and catalytic advantage provided by selenocysteine.Biochemical and biophysical research communications · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dan SuDepartment of Biochemistry, University of Nebraska-Lincoln Lincoln, NE 68588, USA.
Yehua Li
Vadim N Gladyshev
University of Nebraska–Lincoln · US

Funding

IDENTITY OF TERMINATOR AND SELENOCYSTEINE UGA CODONSR01GM061603 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2000 to 2016
$4.0M
NIGMS NIH HHS GM061603NIGMS NIH HHS R01 GM061603
6 · The paper itself

Abstract

Co-translational insertion of selenocysteine (Sec) into proteins in response to UGA codons is directed by selenocysteine insertion sequence (SECIS) elements. In known bacterial selenoprotein genes, SECIS elements are located in the coding regions immediately downstream of UGA codons. Here, we report that a distant SECIS element can also function in Sec insertion in bacteria provided that it is spatially close to the UGA codon. We expressed a mammalian phospholipid hydroperoxide glutathione peroxidase in Escherichia coli from a construct in which a natural E.coli SECIS element was located in the 3'-untranslated region (3'-UTR) and adjacent to a sequence complementary to the region downstream of the Sec UGA codon. Although the major readthrough event at the UGA codon was insertion of tryptophan, Sec was also incorporated and its insertion was dependent on the functional SECIS element in the UTR, base-pairing potential of the SECIS flanking region and the Sec UGA codon. These data provide important implications into evolution of SECIS elements and development of a system for heterologous expression of selenoproteins and show that in addition to the primary sequence arrangement between UGA codons and SECIS elements, their proximity within the tertiary structure can support Sec insertion in bacteria.

Indexed as

Gene Expression Regulation, BacterialProtein BiosynthesisRegulatory Sequences, Ribonucleic Acid3' Untranslated RegionsAnimalsBase SequenceCodonEscherichia coliGlutathione PeroxidaseMiceMolecular Sequence DataPhospholipid Hydroperoxide Glutathione PeroxidaseSelenocysteine3' Untranslated RegionsCodonGlutathione PeroxidasePhospholipid Hydroperoxide Glutathione PeroxidaseRegulatory Sequences, Ribonucleic AcidSelenocysteine

Identifiers

PMID15863725
PMCPMC1087901
OpenAlexW2137001787

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.