Evidence map›Paper›PMID 15863699›Full record

ArticlePlant physiology2005

Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses.

Ron A Salzman, Jeff A Brady, Scott A Finlayson, Christina D Buchanan, Elizabeth J Summer, Feng Sun, Patricia E Klein, Robert R Klein, Lee H Pratt, Marie-Michèle Cordonnier-Pratt and 1 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
19.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 202 citations in OpenAlex.

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  5. Transcriptome Analysis Reveals Contrasting Plant Responses ofInternational journal of molecular sciences · 2022
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  13. Protein Elicitor PeBL1 ofPathogens (Basel, Switzerland) · 2020
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  19. Review
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ron A SalzmanDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, USA.
Jeff A Brady
Scott A Finlayson
Christina D Buchanan
Elizabeth J Summer
Feng Sun
Patricia E Klein
Robert R Klein
Lee H Pratt
Marie-Michèle Cordonnier-Pratt
John E Mullet
United States Department of Agriculture · USTexas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have conducted a large-scale study of gene expression in the C4 monocot sorghum (Sorghum bicolor) L. Moench cv BTx623 in response to the signaling compounds salicylic acid (SA), methyl jasmonate (MeJA), and the ethylene precursor aminocyclopropane carboxylic acid. Expression profiles were generated from seedling root and shoot tissue at 3 and 27 h, using a microarray containing 12,982 nonredundant elements. Data from 102 slides and quantitative reverse transcription-PCR data on mRNA abundance from 171 genes were collected and analyzed and are here made publicly available. Numerous gene clusters were identified in which expression was correlated with particular signaling compound and tissue combinations. Many genes previously implicated in defense responded to the treatments, including numerous pathogenesis-related genes and most members of the phenylpropanoid pathway, and several other genes that may represent novel activities or pathways. Genes of the octadecanoic acid pathway of jasmonic acid (JA) synthesis were induced by SA as well as by MeJA. The resulting hypothesis that increased SA could lead to increased endogenous JA production was confirmed by measurement of JA content. Comparison of responses to SA, MeJA, and combined SA+MeJA revealed patterns of one-way and mutual antagonisms, as well as synergistic effects on regulation of some genes. These experiments thus help further define the transcriptional results of cross talk between the SA and JA pathways and suggest that a subset of genes coregulated by SA and JA may comprise a uniquely evolved sector of plant signaling responsive cascades.

Indexed as

Gene Expression ProfilingTranscription, GeneticAcetatesCell WallCycloleucineCyclopentanesGene Expression Regulation, PlantOligonucleotide Array Sequence AnalysisOxylipinsPlant Growth RegulatorsReproducibility of ResultsSalicylic AcidSignal TransductionSorghumAcetatesCycloleucineCyclopentanesmethyl jasmonateOxylipinsPlant Growth RegulatorsSalicylic Acid

Identifiers

PMID15863699
PMCPMC1104189
OpenAlexW2171490132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.