Evidence map›Paper›PMID 15863615›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Discovery of a unique Ig heavy-chain isotype (IgT) in rainbow trout: Implications for a distinctive B cell developmental pathway in teleost fish.

John D Hansen, Eric D Landis, Ruth B Phillips

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed, 511 citations in OpenAlex.

  1. Article
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  12. Review
  13. Article
  14. Article
  15. Review
  16. Generation of IgMScientific reports · 2025
    Article
  17. Article
  18. CCR7A defines a subpopulation of IgDFrontiers in immunology · 2025
    Article
  19. Immunoglobulin M response in largemouth bass (Frontiers in immunology · 2025
    Article
  20. Article

86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

John D HansenWestern Fisheries Research Center, Biological Resources Division and Department of Pathobiology, U.S. Geological Survey and University of Washington, Seattle, WA 98115, USA. jdh25@u.washington.edu
Eric D Landis
Ruth B Phillips
United States Geological Survey · USUniversity of Maryland, Baltimore · USUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the analysis of Ig superfamily members within the available rainbow trout (Oncorhynchus mykiss) EST gene index, we identified a unique Ig heavy-chain (IgH) isotype. cDNAs encoding this isotype are composed of a typical IgH leader sequence and a VDJ rearranged segment followed by four Ig superfamily C-1 domains represented as either membrane-bound or secretory versions. Because teleost fish were previously thought to encode and express only two IgH isotypes (IgM and IgD) for their humoral immune repertoire, we isolated all three cDNA isotypes from a single homozygous trout (OSU-142) to confirm that all three are indeed independent isotypes. Bioinformatic and phylogenetic analysis indicates that this previously undescribed divergent isotype is restricted to bony fish, thus we have named this isotype "IgT" (tau) for teleost fish. Genomic sequence analysis of an OSU-142 bacterial artificial chromosome (BAC) clone positive for all three IgH isotypes revealed that IgT utilizes the standard rainbow trout V(H) families, but surprisingly, the IgT isotype possesses its own exclusive set of D(H) and J(H) elements for the generation of diversity. The IgT D and J segments and tau constant (C) region genes are located upstream of the D and J elements for IgM, representing a genomic IgH architecture that has not been observed in any other vertebrate class. All three isotypes are primarily expressed in the spleen and pronephros (bone marrow equivalent), and ontogenically, expression of IgT is present 4 d before hatching in developing embryos.

Indexed as

Amino Acid SequenceAnimalsBlotting, NorthernBone MarrowChromosomes, Artificial, BacterialComputational BiologyDNA, ComplementaryDNA PrimersExpressed Sequence TagsGenes, ImmunoglobulinHomozygoteImmunoglobulin DImmunoglobulin Heavy ChainsImmunoglobulin MModels, GeneticMolecular Sequence DataDNA, ComplementaryDNA PrimersImmunoglobulin DImmunoglobulin Heavy ChainsImmunoglobulin MVDJ Recombinases

Identifiers

PMID15863615
PMCPMC1100771
OpenAlexW1971902835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.