Evidence map›Paper›PMID 15863483›Full record

ArticleBiophysical journal2005

Probing the role of negatively charged amino acid residues in ion permeation of skeletal muscle ryanodine receptor.

Ying Wang, Le Xu, Daniel A Pasek, Dirk Gillespie, Gerhard Meissner

Abstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Review
  3. EuBiophysical journal · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. The CaNature communications · 2020
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ying WangDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599-7260, USA.
Le Xu
Daniel A Pasek
Dirk Gillespie
Gerhard Meissner

Funding

SARCOPLASMIC RETICULUM FUNCTION AND REASSEMBLYR01AR018687 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 1986 to 2009
$3.9M
SARCOPLASMIC RETICULUM FUNCTION AND REASSEMBLYR37AR018687 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 1990 to 2019
$3.8M
Ryanodine receptor in cardiac hypertrophy and heart failureR01HL073051 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 2003 to 2013
$3.5M
Mathematics of Ions in Protein ChannelsR01GM067241 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI EISENBERG, ROBERT S. · 2002 to 2005
$1.4M
NHLBI NIH HHS HL 73051NHLBI NIH HHS R01 HL073051NIAMS NIH HHS AR18687NIAMS NIH HHS R01 AR018687NIAMS NIH HHS R37 AR018687NIGMS NIH HHS GM 067241NIGMS NIH HHS R01 GM067241
6 · The paper itself

Abstract

Sequence comparison suggests that the ryanodine receptors (RyRs) have pore architecture similar to that of the bacterial K+ channel KcsA. The lumenal loop linking the two most C-terminal transmembrane spanning segments in the RyRs has a predicted pore helix and an amino acid motif (GGGIG) similar to the selectivity filter (TVGYG) of KcsA identified by x-ray analysis. The RyRs have many negatively charged amino acid residues in the two regions linking the GGGIG motif and predicted pore helix with the two most C-terminal transmembrane spanning segments. We tested the role of these residues by generating single-site mutants, focusing on amino acid residues conserved among the mammalian RyRs. Replacement of two acidic residues immediately after the GGGIG motif in skeletal muscle ryanodine receptor (RyR1-D4899 and -E4900) with asparagine and glutamine profoundly affected ion permeation and selectivity. By comparison, mutagenesis of aspartate and glutamate residues in the putative linker regions showed a K+ conductance and selectivity for Ca2+ compared to K+ (P(Ca)/P(K)) close to wild-type. The results show that the negatively charged carboxyl oxygens of D4899 and E4900 side chains are major determinants of RyR ion conductance and selectivity.

Indexed as

Amino Acid MotifsAmino AcidsAmino Acid SequenceAnimalsAspartic AcidCalciumCationsCell LineDNA, ComplementaryGenetic VectorsGlutamic AcidHumansImmunoblottingIonsMolecular Sequence DataMuscle, SkeletalAmino AcidsAspartic AcidCalciumCationsDNA, ComplementaryGlutamic AcidIonsOxygenPotassiumRyanodineRyanodine Receptor Calcium Release Channel

Identifiers

PMID15863483
PMCPMC1366523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.