ArticleFunctional & integrative genomics2005
Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L.
Article in Functional & integrative genomics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Proteomic Analysis of Sauvignon Blanc Grape Skin, Pulp and Seed and Relative Quantification of Pathogenesis-Related Proteins.PloS one · 2015Article
- Analysis of expressed sequence tags from grapevine flower and fruit and development of simple sequence repeat markers.Molecular biology reports · 2012Article
- Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets.BMC plant biology · 2011Article
- Article
- Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers.BMC genetics · 2010Article
- Generation and Analysis of Expressed Sequence Tags from Olea europaea L.Comparative and functional genomics · 2010Article
- Article
- A framework map from grapevine V3125 (Vitis vinifera 'Schiava grossa' x 'Riesling') x rootstock cultivar 'Börner' (Vitis riparia x Vitis cinerea) to localize genetic determinants of phylloxera root resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions.Proteomics · 2009Article
- Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening.BMC genomics · 2008Article
- Expressed sequence tags from persimmon at different developmental stages.Plant cell reports · 2008Article
- A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- VitisExpDB: a database resource for grape functional genomics.BMC plant biology · 2008Article
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- Article
- Tissue-specific mRNA expression profiling in grape berry tissues.BMC genomics · 2007Article
- Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles.Functional & integrative genomics · 2007Article
- Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection.BMC plant biology · 2007Article
- Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.BMC genomics · 2007Article
- Analyses of expressed sequence tags from apple.Plant physiology · 2006Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Expressed sequence tags (ESTs) are providing a valuable approach to sampling organism-expressed genomes, especially when studying large genomes such as those of many plants. We report on the comparison of 8,647 ESTs generated from six different grape (Vitis vinifera L.) organs: berry, root, leaf, bud, shoot and inflorescence. Clustering and assembly of these ESTs resulted in 4,203 unique sequences and revealed that at this level of EST sampling, each organ shares a low percentage of transcripts with the others. To define organ relationships based on EST counts, we calculated a distance matrix of pairwise correlation coefficients between the libraries which indicated bud, inflorescence and shoot as a group distinct from the other organs considered in this study. A putative function was identified for about 85% of the unique sequences. By assigning them to specific functional classes, we were able to highlight strong differences between organs in the metabolism, protein biosynthesis and photosynthesis categories. This grape EST collection has also proven to be a valuable source for the development of 'functional' simple sequence repeats (SSRs) markers: a total of 405 SSRs have been identified. EST sequences and annotation results have been organised in the IASMA-grape database, freely available at the address http://genomics.iasma.it.
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