Evidence map›Paper›PMID 15854223›Full record

ArticleBMC genomics2005

Investigating hookworm genomes by comparative analysis of two Ancylostoma species.

Makedonka Mitreva, James P McCarter, Prema Arasu, John Hawdon, John Martin, Mike Dante, Todd Wylie, Jian Xu, Jason E Stajich, Wadim Kapulkin and 3 more

Abstract readComparative Study
In one paragraph

Article in BMC genomics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. The genomic basis of nematode parasitism.Briefings in functional genomics · 2018
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Helminth genomics: The implications for human health.PLoS neglected tropical diseases · 2009
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Makedonka MitrevaGenome Sequencing Center, Department of Genetics, Washington University School of Medicine, St. Louis, MO 63108, USA. mmitreva@watson.wustl.edu
James P McCarter
Prema Arasu
John Hawdon
John Martin
Mike Dante
Todd Wylie
Jian Xu
Jason E Stajich
Wadim Kapulkin
Sandra W Clifton
Robert H Waterston
Richard K Wilson

Funding

A GENOMIC APPROACH TO PARASITES FROM THE PHYLUM NEMATODAU01AI046593 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2000 to 2007
$4.0M
NIAID NIH HHS AI 46593NIAID NIH HHS U01 AI046593
6 · The paper itself

Abstract

backgroundHookworms, infecting over one billion people, are the mostly closely related major human parasites to the model nematode Caenorhabditis elegans. Applying genomics techniques to these species, we analyzed 3,840 and 3,149 genes from Ancylostoma caninum and A. ceylanicum.

resultsTranscripts originated from libraries representing infective L3 larva, stimulated L3, arrested L3, and adults. Most genes are represented in single stages including abundant transcripts like hsp-20 in infective L3 and vit-3 in adults. Over 80% of the genes have homologs in C. elegans, and nearly 30% of these were with observable RNA interference phenotypes. Homologies were identified to nematode-specific and clade V specific gene families. To study the evolution of hookworm genes, 574 A. caninum/A. ceylanicum orthologs were identified, all of which were found to be under purifying selection with distribution ratios of nonsynonymous to synonymous amino acid substitutions similar to that reported for C. elegans/C. briggsae orthologs. The phylogenetic distance between A. caninum and A. ceylanicum is almost identical to that for C. elegans/C. briggsae.

conclusionThe genes discovered should substantially accelerate research toward better understanding of the parasites' basic biology as well as new therapies including vaccines and novel anthelmintics.

Indexed as

GenomeAncylostomaAnimalsAnthelminticsCaenorhabditis elegansCluster AnalysisComputational BiologyContig MappingDNA, ComplementaryExpressed Sequence TagsGene LibraryGenomicsHookworm InfectionsHumansMultigene FamilyOpen Reading FramesAnthelminticsDNA, ComplementaryRNARNA, Messenger

Identifiers

PMID15854223
PMCPMC1112591

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.