Evidence map›Paper›PMID 15851486›Full record

ArticleThe Journal of experimental medicine2005

The 3' end of the heavy chain constant region locus enhances germline transcription and switch recombination of the four gamma genes.

Wesley A Dunnick, Jian Shi, Kevin A Graves, John T Collins

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of experimental medicine, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Current insights into the mechanism of mammalian immunoglobulin class switch recombination.Critical reviews in biochemistry and molecular biology · 2019
    Review
  3. Article
  4. Class-Switch Recombination in the Absence of the IgH 3' Regulatory Region.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Article
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  17. Replacement of Igamma3 germ-line promoter by Igamma1 inhibits class-switch recombination to IgG3.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Wesley A DunnickDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. wesadunn@umich.edu
Jian Shi
Kevin A Graves
John T Collins
University of Michigan–Ann Arbor · US

Funding

DNA SEQUENCES INVOLVED IN THE HEAVY CHAIN SWITCHR01CA039068 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DUNNICK, WESLEY A. · 1985 to 2006
$2.0M
NCI NIH HHS CA39068NCI NIH HHS CA46952NCI NIH HHS R01 CA039068
6 · The paper itself

Abstract

The switch in immunoglobulin (Ig) heavy chain class is preceded by germline transcription and then mediated by a DNA recombination event. To study germline transcription and class switch recombination we used transgenic mice with a 230-kilobase bacterial artificial chromosome that included a rearranged VDJ gene and the entire heavy chain constant region locus. In addition to several lines with intact transgenes, we identified two lines in which the heavy chain locus transgene lacked Calpha and everything 3' of it, including the regulatory elements HS3a, HS1-2, HS3b, and HS4. B cells from both lines with the truncated transgenes make abundant transgenic (Tg) VDJCmu transcripts and IgM protein. Deletion of the 3' end of the locus results in dramatically reduced expression of both germline transcripts and switched VDJCH transcripts of the gamma3, gamma2b, gamma2a, and epsilon genes. In addition, the transgenes lacking the 3' end of the locus express reduced amounts of gamma1 germline transcripts and 2-3% of the amount of Tg IgG1 in tissue culture compared with intact transgenes. Finally, switch recombination to gamma1 is undetectable in the transgenes lacking the 3' elements, as measured by digestion circularization-polymerase chain reaction or by the expression of VDJCgamma1 transcripts.

Indexed as

Gene Expression RegulationAnimalsBlotting, SouthernB-LymphocytesChromosomes, Artificial, BacterialDNA PrimersGenes, ImmunoglobulinImmunoglobulin Class SwitchingImmunoglobulin Constant RegionsImmunoglobulin gamma-ChainsImmunoglobulin mu-ChainsMiceMice, TransgenicTransgenesDNA PrimersImmunoglobulin Constant RegionsImmunoglobulin gamma-ChainsImmunoglobulin mu-Chains

Identifiers

PMID15851486
PMCPMC2213191
OpenAlexW2099160101

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.