ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005
Candidate gene database and transcript map for peach, a model species for fruit trees.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 76 citations in OpenAlex.
- Identification and characterization of QTLs for fruit quality traits in peach through a multi-family approach.BMC genomics · 2020Article
- A deletion affecting an LRR-RLK gene co-segregates with the fruit flat shape trait in peach.Scientific reports · 2017Article
- The pineapple AcMADS1 promoter confers high level expression in tomato and Arabidopsis flowering and fruiting tissues, but AcMADS1 does not complement the tomato LeMADS-RIN (rin) mutant.Plant molecular biology · 2014Article
- Genomics and bioinformatics resources for translational science in Rosaceae.Plant biotechnology reports · 2014Review
- Heterogeneity in the entire genome for three genotypes of peach [Prunus persica (L.) Batsch] as distinguished from sequence analysis of genomic variants.BMC genomics · 2013Article
- Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection.BMC genomics · 2011Article
- New approaches to Prunus transcriptome analysis.Genetica · 2011Article
- Unraveling new genes associated with seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis.Molecular biology reports · 2011Article
- Construction of an almond linkage map in an Australian population Nonpareil x Lauranne.BMC genomics · 2010Article
- Non-climacteric fruit ripening in pepper: increased transcription of EIL-like genes normally regulated by ethylene.Functional & integrative genomics · 2010Article
- The development and characterisation of a bacterial artificial chromosome library for Fragaria vesca.BMC research notes · 2009Article
- Synteny of Prunus and other model plant species.BMC genomics · 2009Article
- Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit.Plant molecular biology · 2008Article
- Multiple models for Rosaceae genomics.Plant physiology · 2008Review
- A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers.BMC plant biology · 2008Article
- Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry).BMC plant biology · 2008Article
- GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data.Nucleic acids research · 2008Article
- Article
- Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.BMC genomics · 2006Article
- Identification and mapping of resistance gene analogs (RGAs) in Prunus: a resistance map for Prunus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
Corrections and comments
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Authors and funding
27 authors at 7 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Peach (Prunus persica) is a model species for the Rosaceae, which includes a number of economically important fruit tree species. To develop an extensive Prunus expressed sequence tag (EST) database for identifying and cloning the genes important to fruit and tree development, we generated 9,984 high-quality ESTs from a peach cDNA library of developing fruit mesocarp. After assembly and annotation, a putative peach unigene set consisting of 3,842 ESTs was defined. Gene ontology (GO) classification was assigned based on the annotation of the single "best hit" match against the Swiss-Prot database. No significant homology could be found in the GenBank nr databases for 24.3% of the sequences. Using core markers from the general Prunus genetic map, we anchored bacterial artificial chromosome (BAC) clones on the genetic map, thereby providing a framework for the construction of a physical and transcript map. A transcript map was developed by hybridizing 1,236 ESTs from the putative peach unigene set and an additional 68 peach cDNA clones against the peach BAC library. Hybridizing ESTs to genetically anchored BACs immediately localized 11.2% of the ESTs on the genetic map. ESTs showed a clustering of expressed genes in defined regions of the linkage groups. [The data were built into a regularly updated Genome Database for Rosaceae (GDR), available at (http://www.genome.clemson.edu/gdr/).].
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.