Evidence map›Paper›PMID 15845468›Full record

ArticleInfection and immunity2005

Use of in vivo-induced antigen technology for identification of Escherichia coli O157:H7 proteins expressed during human infection.

Manohar John, Indira T Kudva, Robert W Griffin, Allen W Dodson, Bethany McManus, Bryan Krastins, David Sarracino, Ann Progulske-Fox, Jeffrey D Hillman, Martin Handfield and 2 more

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Interplay between enterohaemorrhagicEmerging microbes & infections · 2020
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  8. Immunoprotective Efficacy of SixFrontiers in microbiology · 2016
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Manohar JohnDivision of Infectious Diseases, Massachusetts General Hospital, Boston, MA 02114, USA. ikudva@partners.org
Indira T Kudva
Robert W Griffin
Allen W Dodson
Bethany McManus
Bryan Krastins
David Sarracino
Ann Progulske-Fox
Jeffrey D Hillman
Martin Handfield
Phillip I Tarr
Stephen B Calderwood
Massachusetts General Hospital · USUniversity of Florida · USCenter for Human Genetics · USHarvard University · USWashington University in St. Louis · US

Funding

PATHOPHYSIOLOGY OF CHILDHOOD HEMOLYTIC UREMIC SYNDROMER01DK052081 · NIDDK · WASHINGTON UNIVERSITY · PI TARR, PHILLIP I · 1996 to 2005
$2.5M
EVOLUTION OF VIRULENCE BY GENE ACQUISITIONR01AI047499 · NIAID · WASHINGTON UNIVERSITY · PI TARR, PHILLIP I · 1999 to 2002
$1.1M
IN VIVO INDUCED ANTIGEN TECHNOLOGY OF AA IN LJPR01DE013523 · NIDCR · UNIVERSITY OF FLORIDA · PI HANDFIELD, MARTIN · 2000 to 2003
$990k
E. coli O157:H7 genes induced during human infectionR21AI055963 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI KUDVA, INDIRA T · 2004 to 2005
$698k
Signature profiling of HUS-causing E. coli O157:H7R03AI053700 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI KUDVA, INDIRA T · 2002 to 2003
$173k
NIAID NIH HHS R01 AI047499NIAID NIH HHS R01 AI47499NIAID NIH HHS R03 AI53700-01NIAID NIH HHS R21 AI055963NIDCR NIH HHS R01 DE013523NIDCR NIH HHS R01 DE13523NIDDK NIH HHS R01 DK052081NIDDK NIH HHS R01 DK52081
6 · The paper itself

Abstract

Using in vivo-induced antigen technology (IVIAT), a modified immunoscreening technique that circumvents the need for animal models, we directly identified immunogenic Escherichia coli O157:H7 (O157) proteins expressed either specifically during human infection but not during growth under standard laboratory conditions or at significantly higher levels in vivo than in vitro. IVIAT identified 223 O157 proteins expressed during human infection, several of which were unique to this study. These in vivo-induced (ivi) proteins, encoded by ivi genes, mapped to the backbone, O islands (OIs), and pO157. Lack of in vitro expression of O157-specific ivi proteins was confirmed by proteomic analysis of a mid-exponential-phase culture of E. coli O157 grown in LB broth. Because ivi proteins are expressed in response to specific cues during infection and might help pathogens adapt to and counter hostile in vivo environments, those identified in this study are potential targets for drug and vaccine development. Also, such proteins may be exploited as markers of O157 infection in stool specimens.

Indexed as

Antigens, BacterialCulture MediaEscherichia coli InfectionsEscherichia coli O157Escherichia coli ProteinsGenomic LibraryHumansImmune SeraProteomeAntigens, BacterialCulture MediaEscherichia coli ProteinsImmune SeraProteome

Identifiers

PMID15845468
PMCPMC1087376
OpenAlexW2131269668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.