Evidence map›Paper›PMID 15843621›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2005

Use of laser-capture microdissection for the identification of marker genes for the ventromedial hypothalamic nucleus.

Jeremy P Segal, Nancy R Stallings, Charlotte E Lee, Liping Zhao, Nicholas Socci, Agnes Viale, Thomas M Harris, Marcelo B Soares, Geoffrey Childs, Joel K Elmquist and 2 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 107 citations in OpenAlex.

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  9. Coordination of Multiple Cellular Processes by NR5A1/Nr5a1.Endocrinology and metabolism (Seoul, Korea) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Jeremy P SegalThe Rockefeller University, New York, New York 10021, USA. segalj@rockefeller.edu <segalj@rockefeller.edu>
Nancy R Stallings
Charlotte E Lee
Liping Zhao
Nicholas Socci
Agnes Viale
Thomas M Harris
Marcelo B Soares
Geoffrey Childs
Joel K Elmquist
Keith L Parker
Jeffrey M Friedman
The University of Texas Southwestern Medical Center · USAlbert Einstein College of Medicine · USBeth Israel Deaconess Medical Center · USRockefeller University · USMemorial Sloan Kettering Cancer Center · USUniversity of Iowa Health Care · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ventromedial hypothalamic nucleus (VMH) plays an important role in the control of feeding and energy homeostasis. In contrast to other hypothalamic nuclei that are also known to regulate energy balance, there is a paucity of nucleus-specific marker genes for the VMH, limiting the application of molecular approaches for analyzing VMH information processing, function, and circuitry. Here, we report the use of laser-capture microdissection to isolate a set of cDNAs that are enriched in the VMH relative to two adjacent hypothalamic nuclei, the arcuate and dorsomedial hypothalamus. The relative expression levels of nine of the 12 most robustly expressed VMH-enriched genes were confirmed by real-time PCR analysis using separate RNAs from these three nuclei. Three of these VMH-enriched genes were further characterized by in situ hybridization histochemistry, including pituitary adenylate cyclase activating polypeptide, cerebellin 1, and an expressed sequence tag named LBH2. Finally, to test whether some of these genes were coordinately regulated, we monitored their expression in steroidogenic factor 1 (SF-1) knock-out mice. SF-1 is a transcription factor that controls the development of the VMH. The RNA levels for four of these genes were reduced in these knock-out animals, further suggesting that they are direct or indirect targets of this orphan nuclear receptor. The VMH-enriched genes identified here provide a basis for a functional analysis of VMH neuronal subpopulations via the use of bacterial artificial chromosome transgenics and related technologies. These results also demonstrate the utility of laser-capture microdissection coupled with microarray technology to identify nucleus-specific transcriptional networks.

Indexed as

LasersAnimalsBiomarkersBlotting, NorthernFemaleFlow CytometryGene Expression RegulationHomeodomain ProteinsIn Situ HybridizationMiceMice, Inbred C57BLMice, KnockoutMicroarray AnalysisMicrodissectionNerve Tissue ProteinsProtein PrecursorsBiomarkersCbln1 protein, mouseHomeodomain ProteinsNerve Tissue ProteinsProtein PrecursorsReceptors, Cytoplasmic and NuclearRNA, MessengerSteroidogenic Factor 1steroidogenic factor 1, mouseTranscription Factors

Identifiers

PMID15843621
PMCPMC6724958
OpenAlexW2163488676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.